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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5m:AB (7.8) BS01 rna ? GO:0003735 ... P80371 21124459
    2 4v5m:AC (7.8) BS01 rna ? GO:0003676 ... P80372 21124459
    3 4v5m:AD (7.8) BS01 rna ? GO:0003723 ... P80373 21124459
    4 4v5m:AE (7.8) BS01 rna ? GO:0003723 ... Q5SHQ5 21124459
    5 4v5m:AF (7.8) BS01 rna ? GO:0003735 ... Q5SLP8 21124459
    6 4v5m:AG (7.8) BS01 rna ? GO:0000028 ... P17291 21124459
    7 4v5m:AH (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    8 4v5m:AI (7.8) BS01 rna ? GO:0000049 ... P80374 21124459
    9 4v5m:AJ (7.8) BS01 rna ? GO:0000049 ... Q5SHN7 21124459
    10 4v5m:AK (7.8) BS01 rna ? GO:0003735 ... P80376 21124459
    11 4v5m:AL (7.8) BS01 rna ? GO:0000049 ... Q5SHN3 21124459
    12 4v5m:AM (7.8) BS01 rna ? GO:0000049 ... P80377 21124459
    13 4v5m:AN (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    14 4v5m:AO (7.8) BS01 rna ? GO:0003735 ... Q5SJ76 21124459
    15 4v5m:AP (7.8) BS01 rna ? GO:0003735 ... Q5SJH3 21124459
    16 4v5m:AQ (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    17 4v5m:AR (7.8) BS01 rna ? GO:0003735 ... Q5SLQ0 21124459
    18 4v5m:AS (7.8) BS01 rna ? GO:0000028 ... Q5SHP2 21124459
    19 4v5m:AT (7.8) BS01 rna ? GO:0003723 ... P80380 21124459
    20 4v5m:AY (7.8) BS01 rna ? GO:0003746 ... Q5SHN5 21124459
    21 4v5m:AY (7.8) BS02 rna ? GO:0003746 ... Q5SHN5 21124459
    22 4v5m:AY (7.8) BS03 FUA ? GO:0003746 ... Q5SHN5 21124459
    23 4v5m:AY (7.8) BS04 GDP ? GO:0003746 ... Q5SHN5 21124459
    24 4v5m:B0 (7.8) BS01 rna ? GO:0003735 ... P60493 21124459
    25 4v5m:B0 (7.8) BS02 rna ? GO:0003735 ... P60493 21124459
    26 4v5m:B1 (7.8) BS01 rna ? GO:0003735 ... P60494 21124459
    27 4v5m:B1 (7.8) BS02 rna ? GO:0003735 ... P60494 21124459
    28 4v5m:B2 (7.8) BS01 rna ? GO:0003735 ... Q5SHP6 21124459
    29 4v5m:B3 (7.8) BS01 rna ? GO:0003735 ... Q5SHQ6 21124459
    30 4v5m:B4 (7.8) BS01 rna ? GO:0003735 ... Q5SJE1 21124459
    31 4v5m:B5 (7.8) BS01 rna ? GO:0003735 ... P80339 21124459
    32 4v5m:B6 (7.8) BS01 rna ? GO:0000049 ... P35871 21124459
    33 4v5m:B7 (7.8) BS01 rna ? GO:0003735 ... P80340 21124459
    34 4v5m:B8 (7.8) BS01 rna ? GO:0003735 ... Q5SKU1 21124459
    35 4v5m:B9 (7.8) BS01 rna ? GO:0003735 ... Q5SHR2 21124459
    36 4v5m:BC (7.8) BS01 rna ? GO:0000049 ... Q5SLP7 21124459
    37 4v5m:BC (7.8) BS02 rna ? GO:0000049 ... Q5SLP7 21124459
    38 4v5m:BD (7.8) BS01 rna ? GO:0002181 ... P60405 21124459
    39 4v5m:BE (7.8) BS01 rna ? GO:0003735 ... Q5SHN8 21124459
    40 4v5m:BF (7.8) BS01 rna ? GO:0003735 ... Q5SHN9 21124459
    41 4v5m:BG (7.8) BS01 rna ? GO:0000049 ... Q5SHQ0 21124459
    42 4v5m:BG (7.8) BS02 rna ? GO:0000049 ... Q5SHQ0 21124459
    43 4v5m:BH (7.8) BS01 rna N/A GO:0003735 ... N/A 21124459
    44 4v5m:BK (7.8) BS01 rna ? GO:0003735 ... Q5SLP6 21124459
    45 4v5m:BN (7.8) BS01 rna ? GO:0003729 ... P60488 21124459
    46 4v5m:BO (7.8) BS01 rna ? GO:0003735 ... Q5SHP8 21124459
    47 4v5m:BO (7.8) BS02 rna ? GO:0003735 ... Q5SHP8 21124459
    48 4v5m:BP (7.8) BS01 rna ? GO:0003735 ... Q5SHQ7 21124459
    49 4v5m:BQ (7.8) BS01 rna ? GO:0000049 ... P60489 21124459
    50 4v5m:BQ (7.8) BS02 rna ? GO:0000049 ... P60489 21124459
    51 4v5m:BR (7.8) BS01 rna ? GO:0003735 ... Q9Z9H5 21124459
    52 4v5m:BS (7.8) BS01 rna ? GO:0003735 ... Q5SHQ4 21124459
    53 4v5m:BS (7.8) BS02 rna ? GO:0003735 ... Q5SHQ4 21124459
    54 4v5m:BT (7.8) BS01 rna ? GO:0003735 ... P60490 21124459
    55 4v5m:BT (7.8) BS02 rna ? GO:0003735 ... P60490 21124459
    56 4v5m:BU (7.8) BS01 rna ? GO:0000027 ... P60491 21124459
    57 4v5m:BV (7.8) BS01 rna ? GO:0003723 ... P60492 21124459
    58 4v5m:BW (7.8) BS01 rna ? GO:0003735 ... Q5SHP3 21124459
    59 4v5m:BX (7.8) BS01 rna ? GO:0000027 ... Q5SHP0 21124459
    60 4v5m:BY (7.8) BS01 rna ? GO:0003723 ... Q5SHP9 21124459
    61 4v5m:BZ (7.8) BS01 rna ? GO:0003723 ... Q5SHZ1 21124459
    62 4v5m:BZ (7.8) BS02 rna ? GO:0003723 ... Q5SHZ1 21124459
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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