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BioLiP
Download all results in tab-seperated text for 101 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ug0:LA (3.6) BS01 rna ? GO:0002181 ... P62917 25901680
    2 4ug0:LA (3.6) BS02 rna ? GO:0002181 ... P62917 25901680
    3 4ug0:LB (3.6) BS01 rna ? GO:0002181 ... P39023 25901680
    4 4ug0:LC (3.6) BS01 rna ? GO:0002181 ... P36578 25901680
    5 4ug0:LC (3.6) BS02 rna ? GO:0002181 ... P36578 25901680
    6 4ug0:LD (3.6) BS01 rna ? GO:0000027 ... P46777 25901680
    7 4ug0:LD (3.6) BS02 rna ? GO:0000027 ... P46777 25901680
    8 4ug0:LE (3.6) BS01 rna ? GO:0000027 ... Q02878 25901680
    9 4ug0:LF (3.6) BS01 rna ? GO:0000463 ... P18124 25901680
    10 4ug0:LF (3.6) BS02 rna ? GO:0000463 ... P18124 25901680
    11 4ug0:LG (3.6) BS01 rna ? GO:0000470 ... P62424 25901680
    12 4ug0:LG (3.6) BS02 rna ? GO:0000470 ... P62424 25901680
    13 4ug0:LH (3.6) BS01 rna ? GO:0002181 ... P32969 25901680
    14 4ug0:LI (3.6) BS01 rna ? GO:0000027 ... Q96L21 25901680
    15 4ug0:LI (3.6) BS02 rna ? GO:0000027 ... Q96L21 25901680
    16 4ug0:LJ (3.6) BS01 rna ? GO:0000027 ... P62913 25901680
    17 4ug0:LJ (3.6) BS02 rna ? GO:0000027 ... P62913 25901680
    18 4ug0:LL (3.6) BS01 rna ? GO:0001824 ... P26373 25901680
    19 4ug0:LL (3.6) BS02 rna ? GO:0001824 ... P26373 25901680
    20 4ug0:LM (3.6) BS01 rna ? GO:0002181 ... P50914 25901680
    21 4ug0:LN (3.6) BS01 rna ? GO:0002181 ... P61313 25901680
    22 4ug0:LN (3.6) BS02 rna ? GO:0002181 ... P61313 25901680
    23 4ug0:LO (3.6) BS01 rna ? GO:0002181 ... P40429 25901680
    24 4ug0:LP (3.6) BS01 rna ? GO:0002181 ... P18621 25901680
    25 4ug0:LP (3.6) BS02 rna ? GO:0002181 ... P18621 25901680
    26 4ug0:LP (3.6) BS03 MG ? GO:0002181 ... P18621 25901680
    27 4ug0:LQ (3.6) BS01 rna ? GO:0002181 ... Q07020 25901680
    28 4ug0:LR (3.6) BS01 rna ? GO:0002181 ... P84098 25901680
    29 4ug0:LR (3.6) BS02 rna ? GO:0002181 ... P84098 25901680
    30 4ug0:LS (3.6) BS01 rna ? GO:0002181 ... Q02543 25901680
    31 4ug0:LS (3.6) BS02 rna ? GO:0002181 ... Q02543 25901680
    32 4ug0:LT (3.6) BS01 rna ? GO:0002181 ... P46778 25901680
    33 4ug0:LT (3.6) BS02 rna ? GO:0002181 ... P46778 25901680
    34 4ug0:LU (3.6) BS01 rna ? GO:0002181 ... P35268 25901680
    35 4ug0:LV (3.6) BS01 rna ? GO:0000122 ... P62829 25901680
    36 4ug0:LW (3.6) BS01 rna ? GO:0000027 ... P83731 25901680
    37 4ug0:LW (3.6) BS02 rna ? GO:0000027 ... P83731 25901680
    38 4ug0:LX (3.6) BS01 rna ? GO:0000027 ... P62750 25901680
    39 4ug0:LX (3.6) BS02 rna ? GO:0000027 ... P62750 25901680
    40 4ug0:LY (3.6) BS01 rna ? GO:0002181 ... P61254 25901680
    41 4ug0:LY (3.6) BS02 rna ? GO:0002181 ... P61254 25901680
    42 4ug0:LZ (3.6) BS01 rna ? GO:0002181 ... P61353 25901680
    43 4ug0:La (3.6) BS01 rna ? GO:0002181 ... P46776 25901680
    44 4ug0:Lb (3.6) BS01 rna ? GO:0002181 ... P47914 25901680
    45 4ug0:Lc (3.6) BS01 rna ? GO:0002181 ... P62888 25901680
    46 4ug0:Ld (3.6) BS01 rna ? GO:0002181 ... P62899 25901680
    47 4ug0:Le (3.6) BS01 rna ? GO:0002181 ... P62910 25901680
    48 4ug0:Lf (3.6) BS01 rna ? GO:0000049 ... P18077 25901680
    49 4ug0:Lg (3.6) BS01 rna ? GO:0002181 ... P49207 25901680
    50 4ug0:Lg (3.6) BS02 ZN ? GO:0002181 ... P49207 25901680
    51 4ug0:Lh (3.6) BS01 rna ? GO:0000463 ... P42766 25901680
    52 4ug0:Lh (3.6) BS02 rna ? GO:0000463 ... P42766 25901680
    53 4ug0:Li (3.6) BS01 rna ? GO:0002181 ... Q9Y3U8 25901680
    54 4ug0:Lj (3.6) BS01 rna ? GO:0002181 ... P61927 25901680
    55 4ug0:Lj (3.6) BS02 rna ? GO:0002181 ... P61927 25901680
    56 4ug0:Lj (3.6) BS03 ZN ? GO:0002181 ... P61927 25901680
    57 4ug0:Lk (3.6) BS01 rna ? GO:0001501 ... P63173 25901680
    58 4ug0:Ll (3.6) BS01 rna ? GO:0002181 ... P62891 25901680
    59 4ug0:Ll (3.6) BS02 rna ? GO:0002181 ... P62891 25901680
    60 4ug0:Lm (3.6) BS01 rna ? GO:0002181 ... P62987 25901680
    61 4ug0:Lm (3.6) BS02 ZN ? GO:0002181 ... P62987 25901680
    62 4ug0:Lo (3.6) BS01 rna ? GO:0002181 ... P83881 25901680
    63 4ug0:Lo (3.6) BS02 rna ? GO:0002181 ... P83881 25901680
    64 4ug0:Lp (3.6) BS01 rna ? GO:0002181 ... P61513 25901680
    65 4ug0:Lp (3.6) BS02 ZN ? GO:0002181 ... P61513 25901680
    66 4ug0:Lr (3.6) BS01 rna ? GO:0002181 ... P46779 25901680
    67 4ug0:Lz (3.6) BS01 rna ? GO:0002181 ... P62906 25901680
    68 4ug0:SA (3.6) BS01 rna ? GO:0000028 ... P08865 25901680
    69 4ug0:SB (3.6) BS01 rna ? GO:0002181 ... P61247 25901680
    70 4ug0:SC (3.6) BS01 rna ? GO:0002181 ... P15880 25901680
    71 4ug0:SD (3.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 25901680
    72 4ug0:SE (3.6) BS01 rna ? GO:0002181 ... P62701 25901680
    73 4ug0:SF (3.6) BS01 rna ? GO:0000028 ... P46782 25901680
    74 4ug0:SF (3.6) BS02 rna ? GO:0000028 ... P46782 25901680
    75 4ug0:SG (3.6) BS01 rna ? GO:0000082 ... P62753 25901680
    76 4ug0:SH (3.6) BS01 rna ? GO:0001843 ... P62081 25901680
    77 4ug0:SI (3.6) BS01 rna ? GO:0000462 ... P62241 25901680
    78 4ug0:SI (3.6) BS02 rna ? GO:0000462 ... P62241 25901680
    79 4ug0:SJ (3.6) BS01 rna ? GO:0002181 ... P46781 25901680
    80 4ug0:SK (3.6) BS01 rna ? GO:0002181 ... P46783 25901680
    81 4ug0:SL (3.6) BS01 rna ? GO:0002181 ... P62280 25901680
    82 4ug0:SM (3.6) BS01 rna N/A GO:0003735 ... N/A 25901680
    83 4ug0:SN (3.6) BS01 rna ? GO:0002181 ... P62277 25901680
    84 4ug0:SO (3.6) BS01 rna ? GO:0000028 ... P62263 25901680
    85 4ug0:SP (3.6) BS01 rna ? GO:0000028 ... P62841 25901680
    86 4ug0:SQ (3.6) BS01 rna ? GO:0000462 ... P62249 25901680
    87 4ug0:SR (3.6) BS01 rna ? GO:0002181 ... P08708 25901680
    88 4ug0:SS (3.6) BS01 rna ? GO:0002181 ... P62269 25901680
    89 4ug0:ST (3.6) BS01 rna ? GO:0000028 ... P39019 25901680
    90 4ug0:SU (3.6) BS01 rna ? GO:0002181 ... P60866 25901680
    91 4ug0:SW (3.6) BS01 rna ? GO:0002181 ... P62244 25901680
    92 4ug0:SX (3.6) BS01 rna ? GO:0002181 ... P62266 25901680
    93 4ug0:SY (3.6) BS01 rna ? GO:0002181 ... P62847 25901680
    94 4ug0:SZ (3.6) BS01 rna ? GO:0002181 ... P62851 25901680
    95 4ug0:Sa (3.6) BS01 rna ? GO:0002181 ... P62854 25901680
    96 4ug0:Sb (3.6) BS01 rna ? GO:0000028 ... P42677 25901680
    97 4ug0:Sc (3.6) BS01 rna ? GO:0000028 ... P62857 25901680
    98 4ug0:Sd (3.6) BS01 rna ? GO:0002181 ... P62273 25901680
    99 4ug0:Se (3.6) BS01 rna ? GO:0003735 ... P62861 25901680
    100 4ug0:Sf (3.6) BS01 rna ? GO:0002181 ... P62979 25901680
    101 4ug0:Sg (3.6) BS01 rna ? GO:0001891 ... P63244 25901680
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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