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BioLiP
Download all results in tab-seperated text for 281 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4u52:m5 (3.0) BS03 OHX ? GO:0002181 ... P05748 25209664
    202 4u52:m5 (3.0) BS04 MG ? GO:0002181 ... P05748 25209664
    203 4u52:m6 (3.0) BS01 rna ? GO:0000470 ... P26784 25209664
    204 4u52:m6 (3.0) BS02 MG ? GO:0000470 ... P26784 25209664
    205 4u52:m7 (3.0) BS01 rna ? GO:0000448 ... P05740 25209664
    206 4u52:m7 (3.0) BS02 rna ? GO:0000448 ... P05740 25209664
    207 4u52:m7 (3.0) BS03 OHX ? GO:0000448 ... P05740 25209664
    208 4u52:m8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    209 4u52:m9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    210 4u52:m9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    211 4u52:n0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    212 4u52:n0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    213 4u52:n1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    214 4u52:n1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    215 4u52:n1 (3.0) BS03 OHX ? GO:0002181 ... Q02753 25209664
    216 4u52:n2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    217 4u52:n3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    218 4u52:n3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    219 4u52:n3 (3.0) BS03 OHX ? GO:0002181 ... P0CX41 25209664
    220 4u52:n4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    221 4u52:n4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    222 4u52:n5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    223 4u52:n5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    224 4u52:n6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    225 4u52:n6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    226 4u52:n6 (3.0) BS03 OHX ? GO:0002181 ... P05743 25209664
    227 4u52:n7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    228 4u52:n8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    229 4u52:n8 (3.0) BS02 OHX ? GO:0002181 ... P02406 25209664
    230 4u52:n8 (3.0) BS03 MG ? GO:0002181 ... P02406 25209664
    231 4u52:n9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    232 4u52:n9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    233 4u52:o0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    234 4u52:o1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    235 4u52:o2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    236 4u52:o3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    237 4u52:o3 (3.0) BS02 MG ? GO:0000027 ... P05744 25209664
    238 4u52:o3 (3.0) BS03 OHX ? GO:0000027 ... P05744 25209664
    239 4u52:o4 (3.0) BS01 rna ? GO:0003735 ... P87262 25209664
    240 4u52:o4 (3.0) BS02 MG ? GO:0003735 ... P87262 25209664
    241 4u52:o5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    242 4u52:o5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    243 4u52:o6 (3.0) BS01 rna ? GO:0002181 ... P05745 25209664
    244 4u52:o7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    245 4u52:o7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    246 4u52:o7 (3.0) BS03 ZN ? GO:0000448 ... P49166 25209664
    247 4u52:o7 (3.0) BS04 OHX ? GO:0000448 ... P49166 25209664
    248 4u52:o8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    249 4u52:o9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    250 4u52:o9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    251 4u52:o9 (3.0) BS03 OHX ? GO:0002181 ... P04650 25209664
    252 4u52:p0 (3.0) BS01 rna ? GO:0000027 ... P05317 25209664
    253 4u52:q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    254 4u52:q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    255 4u52:q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    256 4u52:q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    257 4u52:q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    258 4u52:q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    259 4u52:q3 (3.0) BS02 rna ? GO:0002181 ... P0CX25 25209664
    260 4u52:q3 (3.0) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    261 4u52:s0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    262 4u52:s1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    263 4u52:s1 (3.0) BS02 rna ? GO:0000462 ... P33442 25209664
    264 4u52:s1 (3.0) BS03 OHX ? GO:0000462 ... P33442 25209664
    265 4u52:s1 (3.0) BS04 OHX ? GO:0000462 ... P33442 25209664
    266 4u52:s2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    267 4u52:s3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    268 4u52:s4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    269 4u52:s4 (3.0) BS02 MG ? GO:0002181 ... P0CX35 25209664
    270 4u52:s5 (3.0) BS01 rna ? GO:0000028 ... P26783 25209664
    271 4u52:s6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    272 4u52:s7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    273 4u52:s8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    274 4u52:s8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    275 4u52:s9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    276 4u52:s9 (3.0) BS02 OHX ? GO:0000462 ... O13516 25209664
    277 4u52:sM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    278 4u52:sM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    279 4u52:sM (3.0) BS03 MG ? GO:0000723 ... P39015 25209664
    280 4u52:sR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    281 4u52:sR (3.0) BS02 OHX ? GO:0001965 ... P38011 25209664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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