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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4jbi:A (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    2 4jbi:A (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    3 4jbi:B (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    4 4jbi:B (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    5 4jbi:C (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    6 4jbi:C (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    7 4jbi:D (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    8 4jbi:D (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    9 4jbi:E (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    10 4jbi:E (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    11 4jbi:F (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    12 4jbi:F (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    13 4jbi:G (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    14 4jbi:G (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    15 4jbi:H (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    16 4jbi:H (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    17 4jbi:I (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    18 4jbi:I (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    19 4jbi:J (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    20 4jbi:J (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    21 4jbi:K (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    22 4jbi:K (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    23 4jbi:L (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    24 4jbi:L (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    25 4jbi:M (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    26 4jbi:M (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    27 4jbi:N (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    28 4jbi:N (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    29 4jbi:O (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    30 4jbi:O (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    31 4jbi:P (2.35) BS01 NDP 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    32 4jbi:P (2.35) BS02 ZN 1.1.1.1 GO:0000166 ... Q8ZUP0 23755111
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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