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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4dr6:B (3.3) BS01 rna ? GO:0003735 ... P80371 23322043
    2 4dr6:C (3.3) BS01 rna ? GO:0003676 ... P80372 23322043
    3 4dr6:D (3.3) BS01 rna ? GO:0003723 ... P80373 23322043
    4 4dr6:D (3.3) BS02 MG ? GO:0003723 ... P80373 23322043
    5 4dr6:E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 23322043
    6 4dr6:F (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 23322043
    7 4dr6:F (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 23322043
    8 4dr6:G (3.3) BS01 rna ? GO:0000028 ... P17291 23322043
    9 4dr6:H (3.3) BS01 rna ? GO:0003735 ... P0DOY9 23322043
    10 4dr6:I (3.3) BS01 rna ? GO:0000049 ... P80374 23322043
    11 4dr6:J (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 23322043
    12 4dr6:J (3.3) BS02 MG ? GO:0000049 ... Q5SHN7 23322043
    13 4dr6:K (3.3) BS01 rna ? GO:0003735 ... P80376 23322043
    14 4dr6:L (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 23322043
    15 4dr6:L (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 23322043
    16 4dr6:L (3.3) BS03 SRY ? GO:0000049 ... Q5SHN3 23322043
    17 4dr6:M (3.3) BS01 rna ? GO:0000049 ... P80377 23322043
    18 4dr6:N (3.3) BS01 rna ? GO:0003735 ... P0DOY6 23322043
    19 4dr6:N (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 23322043
    20 4dr6:O (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 23322043
    21 4dr6:P (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 23322043
    22 4dr6:Q (3.3) BS01 rna ? GO:0003735 ... P0DOY7 23322043
    23 4dr6:Q (3.3) BS02 MG ? GO:0003735 ... P0DOY7 23322043
    24 4dr6:R (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 23322043
    25 4dr6:S (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 23322043
    26 4dr6:T (3.3) BS01 rna ? GO:0003723 ... P80380 23322043
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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