Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ce4:0 (4.9) BS01 rna ? GO:0003735 ... A0A4X1U0F6 24362565
    2 4ce4:1 (4.9) BS01 rna ? GO:0003735 ... A0A0R4J8D5 24362565
    3 4ce4:2 (4.9) BS01 rna ? GO:0003735 ... F1SGC7 24362565
    4 4ce4:3 (4.9) BS01 rna ? GO:0003735 ... A0A8D1MIP3 24362565
    5 4ce4:5 (4.9) BS01 rna ? GO:0003735 ... I3LTC4 24362565
    6 4ce4:5 (4.9) BS02 ZN ? GO:0003735 ... I3LTC4 24362565
    7 4ce4:6 (4.9) BS01 rna N/A GO:0003735 ... N/A 24362565
    8 4ce4:7 (4.9) BS01 rna ? GO:0003735 ... W5IDC1 24362565
    9 4ce4:8 (4.9) BS01 rna ? GO:0003735 ... F1SVC5 24362565
    10 4ce4:9 (4.9) BS01 rna N/A GO:0003735 ... N/A 24362565
    11 4ce4:9 (4.9) BS02 ZN N/A GO:0003735 ... N/A 24362565
    12 4ce4:D (4.9) BS01 rna ? GO:0003735 ... F1RRN2 24362565
    13 4ce4:E (4.9) BS01 rna N/A GO:0003735 ... N/A 24362565
    14 4ce4:F (4.9) BS01 rna N/A GO:0003735 ... N/A 24362565
    15 4ce4:I (4.9) BS01 rna ? GO:0003735 ... I3LR45 24362565
    16 4ce4:N (4.9) BS01 rna N/A GO:0003735 ... N/A 24362565
    17 4ce4:O (4.9) BS01 rna ? GO:0003735 ... F1RQV7 24362565
    18 4ce4:P (4.9) BS01 rna N/A GO:0003735 ... N/A 24362565
    19 4ce4:Q (4.9) BS01 rna ? GO:0003735 ... F1RI89 24362565
    20 4ce4:R (4.9) BS01 rna ? GO:0003735 ... F1RMQ4 24362565
    21 4ce4:S (4.9) BS01 rna ? GO:0003735 ... A0A0R4J8D5 24362565
    22 4ce4:U (4.9) BS01 rna N/A GO:0003735 ... N/A 24362565
    23 4ce4:V (4.9) BS01 rna ? GO:0003723 ... F1RY70 24362565
    24 4ce4:W (4.9) BS01 rna ? GO:0003735 ... W5IDB8 24362565
    25 4ce4:X (4.9) BS01 rna ? GO:0003735 ... W5IDB9 24362565
    26 4ce4:Y (4.9) BS01 rna ? GO:0003723 ... F1RHJ1 24362565
    27 4ce4:h (4.9) BS01 rna ? GO:0003725 ... F1SR64 24362565
    28 4ce4:l (4.9) BS01 rna ? GO:0003735 ... A0A0R4J8D5 24362565
    29 4ce4:o (4.9) BS01 rna N/A N/A N/A 24362565
    30 4ce4:x (4.9) BS01 rna N/A N/A N/A 24362565
    31 4ce4:z (4.9) BS01 rna N/A N/A N/A 24362565
    32 4ce4:z (4.9) BS02 rna N/A N/A N/A 24362565
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218