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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4b3r:B (3.0) BS01 rna ? GO:0003735 ... P80371 24473108
    2 4b3r:B (3.0) BS02 MG ? GO:0003735 ... P80371 24473108
    3 4b3r:B (3.0) BS03 MG ? GO:0003735 ... P80371 24473108
    4 4b3r:C (3.0) BS01 rna ? GO:0003676 ... P80372 24473108
    5 4b3r:D (3.0) BS01 rna ? GO:0003723 ... P80373 24473108
    6 4b3r:D (3.0) BS02 MG ? GO:0003723 ... P80373 24473108
    7 4b3r:E (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 24473108
    8 4b3r:F (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 24473108
    9 4b3r:F (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 24473108
    10 4b3r:G (3.0) BS01 rna ? GO:0000028 ... P17291 24473108
    11 4b3r:H (3.0) BS01 rna ? GO:0003735 ... P0DOY9 24473108
    12 4b3r:H (3.0) BS02 MG ? GO:0003735 ... P0DOY9 24473108
    13 4b3r:I (3.0) BS01 rna ? GO:0000049 ... P80374 24473108
    14 4b3r:J (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 24473108
    15 4b3r:J (3.0) BS02 MG ? GO:0000049 ... Q5SHN7 24473108
    16 4b3r:K (3.0) BS01 rna ? GO:0003735 ... P80376 24473108
    17 4b3r:K (3.0) BS02 MG ? GO:0003735 ... P80376 24473108
    18 4b3r:L (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 24473108
    19 4b3r:L (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 24473108
    20 4b3r:M (3.0) BS01 rna ? GO:0000049 ... P80377 24473108
    21 4b3r:M (3.0) BS02 MG ? GO:0000049 ... P80377 24473108
    22 4b3r:N (3.0) BS01 rna ? GO:0003735 ... P0DOY6 24473108
    23 4b3r:N (3.0) BS02 ZN ? GO:0003735 ... P0DOY6 24473108
    24 4b3r:O (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 24473108
    25 4b3r:P (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 24473108
    26 4b3r:Q (3.0) BS01 rna ? GO:0003735 ... P0DOY7 24473108
    27 4b3r:Q (3.0) BS02 MG ? GO:0003735 ... P0DOY7 24473108
    28 4b3r:R (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 24473108
    29 4b3r:S (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 24473108
    30 4b3r:T (3.0) BS01 rna ? GO:0003723 ... P80380 24473108
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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