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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3vdb:A (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    PDBbind: -logKd/Ki=2.52, Ki=3.03mM
    2 3vdb:A (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    3 3vdb:A (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    4 3vdb:B (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    5 3vdb:B (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    6 3vdb:B (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    7 3vdb:C (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    8 3vdb:C (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    9 3vdb:C (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    10 3vdb:D (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    PDBbind: -logKd/Ki=2.52, Ki=3.03mM
    11 3vdb:D (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    12 3vdb:D (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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