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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jbv:0 (3.32) BS01 rna ? GO:0000027 ... P0A7M2 26670735
    2 3jbv:1 (3.32) BS01 rna ? GO:0000027 ... P0A7M6 26670735
    3 3jbv:2 (3.32) BS01 rna ? GO:0000027 ... P0AG51 26670735
    4 3jbv:3 (3.32) BS01 rna ? GO:0000027 ... P0A7N4 26670735
    5 3jbv:4 (3.32) BS01 rna ? GO:0000027 ... P0A7N9 26670735
    6 3jbv:6 (3.32) BS01 rna ? GO:0002181 ... P0A7P5 26670735
    7 3jbv:7 (3.32) BS01 rna ? GO:0002181 ... P0A7Q1 26670735
    8 3jbv:8 (3.32) BS01 rna ? GO:0002181 ... P0A7Q6 26670735
    9 3jbv:B (3.32) BS01 rna ? GO:0000028 ... P0A7V0 26670735
    10 3jbv:C (3.32) BS01 rna ? GO:0000028 ... P0A7V3 26670735
    11 3jbv:C (3.32) BS02 rna ? GO:0000028 ... P0A7V3 26670735
    12 3jbv:D (3.32) BS01 rna ? GO:0000028 ... P0A7V8 26670735
    13 3jbv:E (3.32) BS01 rna ? GO:0000028 ... P0A7W1 26670735
    14 3jbv:F (3.32) BS01 rna ? GO:0002181 ... P02358 26670735
    15 3jbv:G (3.32) BS01 rna ? GO:0003723 ... C4ZUJ6 26670735
    16 3jbv:H (3.32) BS01 rna ? GO:0000028 ... P0A7W7 26670735
    17 3jbv:I (3.32) BS01 rna ? GO:0000049 ... P0A7X3 26670735
    18 3jbv:I (3.32) BS02 rna ? GO:0000049 ... P0A7X3 26670735
    19 3jbv:J (3.32) BS01 rna ? GO:0000049 ... P0A7R5 26670735
    20 3jbv:K (3.32) BS01 rna ? GO:0002181 ... P0A7R9 26670735
    21 3jbv:L (3.32) BS01 rna ? GO:0000049 ... P0A7S3 26670735
    22 3jbv:M (3.32) BS01 rna ? GO:0000049 ... P0A7S9 26670735
    23 3jbv:N (3.32) BS01 rna ? GO:0000028 ... P0AG59 26670735
    24 3jbv:O (3.32) BS01 rna ? GO:0003735 ... Q8X9M2 26670735
    25 3jbv:O (3.32) BS02 rna ? GO:0003735 ... Q8X9M2 26670735
    26 3jbv:P (3.32) BS01 rna ? GO:0000028 ... P0A7T3 26670735
    27 3jbv:Q (3.32) BS01 rna ? GO:0000028 ... P0AG63 26670735
    28 3jbv:R (3.32) BS01 rna ? GO:0002181 ... P0A7T7 26670735
    29 3jbv:S (3.32) BS01 rna ? GO:0000028 ... P0A7U3 26670735
    30 3jbv:T (3.32) BS01 rna ? GO:0000028 ... P0A7U7 26670735
    31 3jbv:U (3.32) BS01 rna ? GO:0000028 ... P68679 26670735
    32 3jbv:c (3.32) BS01 rna ? GO:0000027 ... P60422 26670735
    33 3jbv:c (3.32) BS02 rna ? GO:0000027 ... P60422 26670735
    34 3jbv:d (3.32) BS01 rna ? GO:0000027 ... P60438 26670735
    35 3jbv:e (3.32) BS01 rna ? GO:0001070 ... P60723 26670735
    36 3jbv:e (3.32) BS02 peptide ? GO:0001070 ... P60723 26670735
    37 3jbv:f (3.32) BS01 rna ? GO:0000027 ... P62399 26670735
    38 3jbv:f (3.32) BS02 rna ? GO:0000027 ... P62399 26670735
    39 3jbv:g (3.32) BS01 rna ? GO:0000027 ... P0AG55 26670735
    40 3jbv:h (3.32) BS01 rna ? GO:0002181 ... P0A7R1 26670735
    41 3jbv:i (3.32) BS01 rna ? GO:0000027 ... P0A7J7 26670735
    42 3jbv:j (3.32) BS01 rna ? GO:0002181 ... P0AA10 26670735
    43 3jbv:k (3.32) BS01 rna ? GO:0002181 ... P0ADY3 26670735
    44 3jbv:k (3.32) BS02 rna ? GO:0002181 ... P0ADY3 26670735
    45 3jbv:l (3.32) BS01 rna ? GO:0002181 ... P02413 26670735
    46 3jbv:m (3.32) BS01 rna ? GO:0000027 ... P0ADY7 26670735
    47 3jbv:m (3.32) BS02 rna ? GO:0000027 ... P0ADY7 26670735
    48 3jbv:n (3.32) BS01 rna ? GO:0000027 ... P0AG44 26670735
    49 3jbv:o (3.32) BS01 rna ? GO:0002181 ... P0C018 26670735
    50 3jbv:o (3.32) BS02 rna ? GO:0002181 ... P0C018 26670735
    51 3jbv:p (3.32) BS01 rna ? GO:0000027 ... P0A7K6 26670735
    52 3jbv:p (3.32) BS02 rna ? GO:0000027 ... P0A7K6 26670735
    53 3jbv:q (3.32) BS01 rna ? GO:0000027 ... P0A7L3 26670735
    54 3jbv:r (3.32) BS01 rna ? GO:0002181 ... P0AG48 26670735
    55 3jbv:s (3.32) BS01 rna ? GO:0002181 ... P61175 26670735
    56 3jbv:s (3.32) BS02 peptide ? GO:0002181 ... P61175 26670735
    57 3jbv:t (3.32) BS01 rna ? GO:0000027 ... P0ADZ0 26670735
    58 3jbv:u (3.32) BS01 rna ? GO:0000027 ... P60624 26670735
    59 3jbv:w (3.32) BS01 rna ? GO:0000027 ... P68919 26670735
    60 3jbv:y (3.32) BS01 rna ? GO:0000027 ... P0A7L8 26670735
    61 3jbv:y (3.32) BS02 rna ? GO:0000027 ... P0A7L8 26670735
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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