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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3dug:A (2.62) BS01 ZN N/A GO:0016787 ... N/A 19281183
    2 3dug:A (2.62) BS02 ZN N/A GO:0016787 ... N/A 19281183
    3 3dug:A (2.62) BS03 ZN N/A GO:0016787 ... N/A 19281183
    4 3dug:A (2.62) BS04 ZN N/A GO:0016787 ... N/A 19281183
    5 3dug:A (2.62) BS05 ARG N/A GO:0016787 ... N/A 19281183
    6 3dug:B (2.62) BS01 ZN N/A GO:0016787 ... N/A 19281183
    7 3dug:B (2.62) BS02 ZN N/A GO:0016787 ... N/A 19281183
    8 3dug:B (2.62) BS03 ZN N/A GO:0016787 ... N/A 19281183
    9 3dug:B (2.62) BS04 ZN N/A GO:0016787 ... N/A 19281183
    10 3dug:B (2.62) BS05 ARG N/A GO:0016787 ... N/A 19281183
    11 3dug:C (2.62) BS01 ZN N/A GO:0016787 ... N/A 19281183
    12 3dug:C (2.62) BS02 ZN N/A GO:0016787 ... N/A 19281183
    13 3dug:C (2.62) BS03 ZN N/A GO:0016787 ... N/A 19281183
    14 3dug:C (2.62) BS04 ZN N/A GO:0016787 ... N/A 19281183
    15 3dug:C (2.62) BS05 ARG N/A GO:0016787 ... N/A 19281183
    16 3dug:D (2.62) BS01 ZN N/A GO:0016787 ... N/A 19281183
    17 3dug:D (2.62) BS02 ZN N/A GO:0016787 ... N/A 19281183
    18 3dug:D (2.62) BS03 ZN N/A GO:0016787 ... N/A 19281183
    19 3dug:D (2.62) BS04 ARG N/A GO:0016787 ... N/A 19281183
    20 3dug:E (2.62) BS01 ZN N/A GO:0016787 ... N/A 19281183
    21 3dug:E (2.62) BS02 ZN N/A GO:0016787 ... N/A 19281183
    22 3dug:E (2.62) BS03 ZN N/A GO:0016787 ... N/A 19281183
    23 3dug:E (2.62) BS04 ZN N/A GO:0016787 ... N/A 19281183
    24 3dug:E (2.62) BS05 ARG N/A GO:0016787 ... N/A 19281183
    25 3dug:F (2.62) BS01 ZN N/A GO:0016787 ... N/A 19281183
    26 3dug:F (2.62) BS02 ZN N/A GO:0016787 ... N/A 19281183
    27 3dug:F (2.62) BS03 ZN N/A GO:0016787 ... N/A 19281183
    28 3dug:F (2.62) BS04 ZN N/A GO:0016787 ... N/A 19281183
    29 3dug:F (2.62) BS05 ARG N/A GO:0016787 ... N/A 19281183
    30 3dug:G (2.62) BS01 ZN N/A GO:0016787 ... N/A 19281183
    31 3dug:G (2.62) BS02 ZN N/A GO:0016787 ... N/A 19281183
    32 3dug:G (2.62) BS03 ZN N/A GO:0016787 ... N/A 19281183
    33 3dug:G (2.62) BS04 ZN N/A GO:0016787 ... N/A 19281183
    34 3dug:G (2.62) BS05 ARG N/A GO:0016787 ... N/A 19281183
    35 3dug:H (2.62) BS01 ZN N/A GO:0016787 ... N/A 19281183
    36 3dug:H (2.62) BS02 ZN N/A GO:0016787 ... N/A 19281183
    37 3dug:H (2.62) BS03 ZN N/A GO:0016787 ... N/A 19281183
    38 3dug:H (2.62) BS04 ZN N/A GO:0016787 ... N/A 19281183
    39 3dug:H (2.62) BS05 ARG N/A GO:0016787 ... N/A 19281183
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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