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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2wva:A (2.2) BS01 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    2 2wva:A (2.2) BS02 MG 4.1.1.1 GO:0000287 ... P06672 20099870
    3 2wva:A (2.2) BS03 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    4 2wva:B (2.2) BS01 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    5 2wva:B (2.2) BS02 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    6 2wva:B (2.2) BS03 MG 4.1.1.1 GO:0000287 ... P06672 20099870
    7 2wva:E (2.2) BS01 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    8 2wva:E (2.2) BS02 MG 4.1.1.1 GO:0000287 ... P06672 20099870
    9 2wva:E (2.2) BS03 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    10 2wva:E (2.2) BS04 PYR 4.1.1.1 GO:0000287 ... P06672 20099870
    11 2wva:F (2.2) BS01 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    12 2wva:F (2.2) BS02 MG 4.1.1.1 GO:0000287 ... P06672 20099870
    13 2wva:F (2.2) BS03 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    14 2wva:F (2.2) BS04 PYR 4.1.1.1 GO:0000287 ... P06672 20099870
    15 2wva:V (2.2) BS01 TPU 4.1.1.1 GO:0000287 ... P06672 20099870 PDBbind: -logKd/Ki=10.70, Kd=20pM
    16 2wva:V (2.2) BS02 MG 4.1.1.1 GO:0000287 ... P06672 20099870
    17 2wva:V (2.2) BS03 PYR 4.1.1.1 GO:0000287 ... P06672 20099870
    18 2wva:V (2.2) BS04 TPU 4.1.1.1 GO:0000287 ... P06672 20099870 PDBbind: -logKd/Ki=10.70, Kd=20pM
    19 2wva:V (2.2) BS05 PYR 4.1.1.1 GO:0000287 ... P06672 20099870
    20 2wva:X (2.2) BS01 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    21 2wva:X (2.2) BS02 MG 4.1.1.1 GO:0000287 ... P06672 20099870
    22 2wva:X (2.2) BS03 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    23 2wva:Y (2.2) BS01 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    24 2wva:Y (2.2) BS02 TPU 4.1.1.1 GO:0000287 ... P06672 20099870
    25 2wva:Y (2.2) BS03 MG 4.1.1.1 GO:0000287 ... P06672 20099870
    26 2wva:Z (2.2) BS01 TPU 4.1.1.1 GO:0000287 ... P06672 20099870 PDBbind: -logKd/Ki=10.70, Kd=20pM
    27 2wva:Z (2.2) BS02 PYR 4.1.1.1 GO:0000287 ... P06672 20099870
    28 2wva:Z (2.2) BS03 MG 4.1.1.1 GO:0000287 ... P06672 20099870
    29 2wva:Z (2.2) BS04 TPU 4.1.1.1 GO:0000287 ... P06672 20099870 PDBbind: -logKd/Ki=10.70, Kd=20pM
    30 2wva:Z (2.2) BS05 PYR 4.1.1.1 GO:0000287 ... P06672 20099870
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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