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BioLiP
Download all results in tab-seperated text for 218 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1vy4:DR (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    202 1vy4:DS (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    203 1vy4:DS (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    204 1vy4:DT (2.6) BS01 rna ? GO:0003735 ... P60490 25132179
    205 1vy4:DT (2.6) BS02 rna ? GO:0003735 ... P60490 25132179
    206 1vy4:DU (2.6) BS01 rna ? GO:0000027 ... P60491 25132179
    207 1vy4:DU (2.6) BS02 MG ? GO:0000027 ... P60491 25132179
    208 1vy4:DU (2.6) BS03 MG ? GO:0000027 ... P60491 25132179
    209 1vy4:DV (2.6) BS01 rna ? GO:0003723 ... P60492 25132179
    210 1vy4:DV (2.6) BS02 MG ? GO:0003723 ... P60492 25132179
    211 1vy4:DV (2.6) BS03 MG ? GO:0003723 ... P60492 25132179
    212 1vy4:DW (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    213 1vy4:DW (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    214 1vy4:DX (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    215 1vy4:DY (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    216 1vy4:DY (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    217 1vy4:DZ (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    218 1vy4:DZ (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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