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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gtf:A (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    2 1gtf:A (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    3 1gtf:B (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    4 1gtf:B (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    5 1gtf:C (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    6 1gtf:C (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    7 1gtf:D (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    8 1gtf:D (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9 1gtf:E (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    10 1gtf:E (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    11 1gtf:F (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    12 1gtf:F (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13 1gtf:G (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    14 1gtf:G (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15 1gtf:H (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16 1gtf:H (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    17 1gtf:I (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    18 1gtf:I (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    19 1gtf:J (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    20 1gtf:J (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    21 1gtf:K (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    22 1gtf:K (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    23 1gtf:L (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    24 1gtf:L (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    25 1gtf:L (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    26 1gtf:M (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    27 1gtf:M (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    28 1gtf:M (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    29 1gtf:N (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    30 1gtf:N (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    31 1gtf:N (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    32 1gtf:O (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    33 1gtf:O (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    34 1gtf:O (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    35 1gtf:P (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    36 1gtf:P (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    37 1gtf:P (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    38 1gtf:Q (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    39 1gtf:Q (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    40 1gtf:Q (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    41 1gtf:R (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    42 1gtf:R (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    43 1gtf:R (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    44 1gtf:S (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    45 1gtf:S (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    46 1gtf:S (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    47 1gtf:T (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    48 1gtf:T (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    49 1gtf:T (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    50 1gtf:U (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    51 1gtf:U (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    52 1gtf:U (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    53 1gtf:V (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    54 1gtf:V (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    55 1gtf:V (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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