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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dv3:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 10677497
    2 1dv3:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 10677497
    3 1dv3:L (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 10677497
    4 1dv3:L (2.5) BS04 U10 ? GO:0009772 ... P0C0Y8 10677497
    5 1dv3:L (2.5) BS05 FE2 ? GO:0009772 ... P0C0Y8 10677497
    6 1dv3:L (2.5) BS06 BCL ? GO:0009772 ... P0C0Y8 10677497
    7 1dv3:L (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 10677497
    8 1dv3:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 10677497
    9 1dv3:M (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 10677497
    10 1dv3:M (2.5) BS03 FE2 ? GO:0009772 ... P0C0Y9 10677497
    11 1dv3:M (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 10677497
    12 1dv3:M (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 10677497
    13 1dv3:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 10677497
    14 1dv3:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 10677497
    15 1dv3:R (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 10677497
    16 1dv3:R (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 10677497
    17 1dv3:R (2.5) BS03 BPH ? GO:0009772 ... P0C0Y8 10677497
    18 1dv3:R (2.5) BS04 U10 ? GO:0009772 ... P0C0Y8 10677497
    19 1dv3:R (2.5) BS05 FE2 ? GO:0009772 ... P0C0Y8 10677497
    20 1dv3:R (2.5) BS06 BCL ? GO:0009772 ... P0C0Y8 10677497
    21 1dv3:R (2.5) BS07 BPH ? GO:0009772 ... P0C0Y8 10677497
    22 1dv3:S (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 10677497
    23 1dv3:S (2.5) BS02 BPH ? GO:0009772 ... P0C0Y9 10677497
    24 1dv3:S (2.5) BS03 FE2 ? GO:0009772 ... P0C0Y9 10677497
    25 1dv3:S (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 10677497
    26 1dv3:S (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 10677497
    27 1dv3:S (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 10677497
    28 1dv3:S (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 10677497
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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