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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38201 1olt:A (2.07) BS03 SAM 1.3.98.3 GO:0003824 ... P32131 14633981
    38202 1olu:A (1.9) BS01 MG 1.2.4.4 GO:0003863 ... P12694 12902323
    38203 1olu:A (1.9) BS02 TPP 1.2.4.4 GO:0003863 ... P12694 12902323
    38204 1olx:A (2.25) BS01 MN 1.2.4.4 GO:0003863 ... P12694 12902323
    38205 1olx:A (2.25) BS02 TPP 1.2.4.4 GO:0003863 ... P12694 12902323
    38206 1om1:A (1.68) BS01 IQA 2.7.11.1 GO:0004672 ... P28523 12816539 MOAD: Ki=0.17uM
    PDBbind: -logKd/Ki=6.77, Ki=0.17uM
    38207 1om2:A (-1.00) BS01 peptide ? GO:0005742 ... Q62760 10721992
    38208 1om4:A (1.75) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    38209 1om4:A (1.75) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    38210 1om4:A (1.75) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    38211 1om4:A (1.75) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    38212 1om4:A (1.75) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 N/A
    38213 1om4:B (1.75) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    38214 1om4:B (1.75) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    38215 1om4:B (1.75) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    38216 1om4:B (1.75) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    38217 1om4:B (1.75) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 N/A
    38218 1om5:A (2.3) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    38219 1om5:A (2.3) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    38220 1om5:A (2.3) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    38221 1om5:A (2.3) BS04 INE 1.14.13.39 GO:0004517 ... P29476 N/A BindingDB: IC50=1800nM
    38222 1om5:A (2.3) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    38223 1om5:B (2.3) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    38224 1om5:B (2.3) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    38225 1om5:B (2.3) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    38226 1om5:B (2.3) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    38227 1om5:B (2.3) BS05 INE 1.14.13.39 GO:0004517 ... P29476 N/A BindingDB: IC50=1800nM
    38228 1om6:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38229 1om6:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38230 1om6:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38231 1om6:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38232 1om6:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38233 1om6:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38234 1om7:A (2.8) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38235 1om7:A (2.8) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38236 1om7:A (2.8) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38237 1om7:A (2.8) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38238 1om7:A (2.8) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38239 1om8:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38240 1om8:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38241 1om8:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38242 1om8:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38243 1om8:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38244 1om8:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38245 1om9:A (2.5) BS01 peptide ? GO:0005802 ... Q9UJY5 12858163
    38246 1om9:B (2.5) BS01 peptide ? GO:0005802 ... Q9UJY5 12858163
    38247 1omd:A (1.85) BS01 CA ? GO:0005509 ... P02631 2231727
    38248 1omd:A (1.85) BS02 CA ? GO:0005509 ... P02631 2231727
    38249 1omd:A (1.85) BS03 CA ? GO:0005509 ... P02631 2231727
    38250 1omh:A (1.95) BS01 dna ? N/A Q47673 14625590 PDBbind: Kd=70nM
    38251 1omj:A (2.38) BS01 ZN 3.4.24.40 GO:0004222 ... O69771 12837794
    38252 1omj:A (2.38) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38253 1omj:A (2.38) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38254 1omj:A (2.38) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38255 1omj:A (2.38) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38256 1omj:A (2.38) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38257 1omj:A (2.38) BS07 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38258 1omj:A (2.38) BS08 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38259 1omj:A (2.38) BS09 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    38260 1omo:A (2.32) BS01 NAD 1.4.1.1 GO:0000166 ... O28608 15313611
    38261 1omo:B (2.32) BS01 NAD 1.4.1.1 GO:0000166 ... O28608 15313611
    38262 1omr:A (1.5) BS01 CA ? GO:0001750 ... P21457 12686556
    38263 1omv:A (1.9) BS01 CA ? GO:0001750 ... P21457 12686556
    38264 1omz:A (2.1) BS01 UD2 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    38265 1omz:B (2.1) BS01 UD2 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    38266 1on1:A (1.75) BS01 MN ? GO:0003677 ... P54512 12847518
    38267 1on1:A (1.75) BS02 MN ? GO:0003677 ... P54512 12847518
    38268 1on1:B (1.75) BS01 MN ? GO:0003677 ... P54512 12847518
    38269 1on1:B (1.75) BS02 MN ? GO:0003677 ... P54512 12847518
    38270 1on2:A (1.61) BS01 MN ? GO:0003677 ... P54512 12847518
    38271 1on2:B (1.61) BS01 MN ? GO:0003677 ... P54512 12847518
    38272 1on3:A (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38273 1on3:A (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38274 1on3:B (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38275 1on3:B (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38276 1on3:C (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38277 1on3:C (1.9) BS02 DXX 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38278 1on3:C (1.9) BS03 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38279 1on3:D (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38280 1on3:D (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38281 1on3:E (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38282 1on3:E (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38283 1on3:F (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38284 1on3:F (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38285 1on3:F (1.9) BS03 DXX 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38286 1on6:A (2.3) BS01 UD1 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    38287 1on6:B (2.3) BS01 UD1 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    38288 1on8:A (2.7) BS01 BDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    38289 1on8:A (2.7) BS02 UDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    38290 1on8:B (2.7) BS01 BDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    38291 1on8:B (2.7) BS02 UDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    38292 1on9:A (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38293 1on9:B (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38294 1on9:C (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38295 1on9:D (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38296 1on9:E (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38297 1on9:F (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    38298 1ona:A (2.35) BS01 MAN ? GO:0030246 ... P02866 8940035
    38299 1ona:A (2.35) BS02 MAN ? GO:0030246 ... P02866 8940035
    38300 1ona:A (2.35) BS03 MN ? GO:0030246 ... P02866 8940035
    38301 1ona:A (2.35) BS04 CA ? GO:0030246 ... P02866 8940035
    38302 1ona:B (2.35) BS01 MMA ? GO:0030246 ... P02866 8940035
    38303 1ona:B (2.35) BS02 MAN ? GO:0030246 ... P02866 8940035
    38304 1ona:B (2.35) BS03 MAN ? GO:0030246 ... P02866 8940035
    38305 1ona:B (2.35) BS04 MN ? GO:0030246 ... P02866 8940035
    38306 1ona:B (2.35) BS05 CA ? GO:0030246 ... P02866 8940035
    38307 1ona:C (2.35) BS01 MAN ? GO:0030246 ... P02866 8940035
    38308 1ona:C (2.35) BS02 MAN ? GO:0030246 ... P02866 8940035
    38309 1ona:C (2.35) BS03 MN ? GO:0030246 ... P02866 8940035
    38310 1ona:C (2.35) BS04 CA ? GO:0030246 ... P02866 8940035
    38311 1ona:D (2.35) BS01 MAN ? GO:0030246 ... P02866 8940035
    38312 1ona:D (2.35) BS02 MAN ? GO:0030246 ... P02866 8940035
    38313 1ona:D (2.35) BS03 MN ? GO:0030246 ... P02866 8940035
    38314 1ona:D (2.35) BS04 CA ? GO:0030246 ... P02866 8940035
    38315 1onc:A (1.7) BS01 SO4 3.1.27.- GO:0003676 ... P22069 8120892
    38316 1ond:Q (3.4) BS01 rna ? GO:0003735 ... Q9RXJ7 12665853
    38317 1ond:Z (3.4) BS01 rna ? GO:0003735 ... P49228 12665853
    38318 1one:A (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8605183
    38319 1one:A (1.8) BS02 PEP 4.2.1.11 GO:0000015 ... P00924 8605183
    38320 1one:A (1.8) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 8605183
    38321 1one:B (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8605183
    38322 1one:B (1.8) BS02 PEP 4.2.1.11 GO:0000015 ... P00924 8605183
    38323 1one:B (1.8) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 8605183
    38324 1onf:A (2.6) BS01 FAD 1.8.1.7 GO:0004362 ... Q94655 12729762
    38325 1ong:A (1.1) BS01 MA4 3.5.2.6 GO:0008800 ... P0AD64 14609325
    38326 1ong:A (1.1) BS02 MA4 3.5.2.6 GO:0008800 ... P0AD64 14609325
    38327 1ong:A (1.1) BS03 WY4 3.5.2.6 GO:0008800 ... P0AD64 14609325 PDBbind: -logKd/Ki=8.05, IC50=9nM
    38328 1onh:A (1.38) BS01 WY4 3.5.2.6 GO:0008800 ... Q59401 14609325 PDBbind: -logKd/Ki=8.21, IC50=6.2nM
    38329 1onk:A (2.1) BS01 AZI 3.2.2.22 GO:0017148 ... P81446 N/A
    38330 1onk:B (2.1) BS01 AZI 3.2.2.22 N/A P81446 N/A
    38331 1onk:B (2.1) BS02 AZI 3.2.2.22 N/A P81446 N/A
    38332 1onk:B (2.1) BS03 AZI 3.2.2.22 N/A P81446 N/A
    38333 1onk:B (2.1) BS04 AZI 3.2.2.22 N/A P81446 N/A
    38334 1ono:A (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    38335 1ono:B (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    38336 1onp:A (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    38337 1onp:A (2.5) BS02 FOM 1.1.1.267 GO:0008299 ... P45568 12621040 PDBbind: -logKd/Ki=7.52, IC50=0.030uM
    BindingDB: IC50=30nM
    38338 1onp:B (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    38339 1onp:B (2.5) BS02 FOM 1.1.1.267 GO:0008299 ... P45568 12621040 BindingDB: IC50=30nM
    38340 1onq:A (2.15) BS01 SLF ? N/A P06126 12833155
    38341 1onq:C (2.15) BS01 SLF ? N/A P06126 12833155
    38342 1ons:A (2.2) BS01 ZN 3.1.2.-
    3.5.1.-
    3.5.1.124
    4.2.1.130
    GO:0005515 ... P31658 14500888
    38343 1onv:A (-1.00) BS01 peptide ? GO:0003677 ... P35269 12732728
    38344 1onw:A (1.65) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    38345 1onw:A (1.65) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    38346 1onw:B (1.65) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    38347 1onw:B (1.65) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    38348 1onx:A (2.1) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    38349 1onx:A (2.1) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    38350 1onx:A (2.1) BS03 ASP 3.4.19.- GO:0005737 ... P39377 12718528
    38351 1onx:B (2.1) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    38352 1onx:B (2.1) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    38353 1onx:B (2.1) BS03 ASP 3.4.19.- GO:0005737 ... P39377 12718528
    38354 1ony:A (2.15) BS01 588 3.1.3.48 GO:0004725 ... P18031 12747781 PDBbind: -logKd/Ki=6.77, Ki=0.17uM
    BindingDB: Ki=170nM
    38355 1onz:A (2.4) BS01 968 3.1.3.48 GO:0004725 ... P18031 12747781 PDBbind: -logKd/Ki=5.10, Kd=8uM
    BindingDB: Ki=25119nM
    38356 1oo4:A (-1.00) BS01 peptide ? N/A P23727 14503862
    38357 1oo5:A (2.5) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38358 1oo5:A (2.5) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38359 1oo5:B (2.5) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38360 1oo5:B (2.5) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38361 1oo6:A (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38362 1oo6:A (2.0) BS02 SN2 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38363 1oo6:A (2.0) BS03 SN2 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38364 1oo6:A (2.0) BS04 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38365 1oo6:B (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38366 1oo6:B (2.0) BS02 SN2 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38367 1oo6:B (2.0) BS03 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38368 1ooa:A (2.45) BS01 rna ? GO:0003677 ... P25799 12886018
    38369 1ooa:B (2.45) BS01 rna ? GO:0003677 ... P25799 12886018
    38370 1oog:A (1.45) BS01 POL ? GO:0005549 ... O02372 12881720
    38371 1oog:B (1.45) BS01 POL ? GO:0005549 ... O02372 12881720
    38372 1ooh:A (1.25) BS01 1BO ? GO:0005549 ... O02372 12881720
    38373 1ooh:B (1.25) BS01 1BO ? GO:0005549 ... O02372 12881720
    38374 1ooj:A (2.11) BS01 CA ? GO:0005509 ... O16305 14635136
    38375 1ooj:A (2.11) BS02 CA ? GO:0005509 ... O16305 14635136
    38376 1ooj:A (2.11) BS03 CA ? GO:0005509 ... O16305 14635136
    38377 1ooj:A (2.11) BS04 CA ? GO:0005509 ... O16305 14635136
    38378 1ook:B (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 12855810
    38379 1oon:A (2.49) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38380 1oon:A (2.49) BS02 BEL 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38381 1oon:A (2.49) BS03 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38382 1oon:B (2.49) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38383 1oon:B (2.49) BS02 BEL 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38384 1oon:B (2.49) BS03 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38385 1ooq:A (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38386 1ooq:A (2.0) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38387 1ooq:A (2.0) BS03 DTC 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38388 1ooq:B (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38389 1ooq:B (2.0) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38390 1ooq:B (2.0) BS03 DTC 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    38391 1oow:A (2.0) BS01 CU ? GO:0005507 ... P00289 14670610
    38392 1op0:A (2.0) BS01 FUC 3.4.21.- GO:0004252 ... Q9I8X1 15632114
    38393 1opb:A (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    38394 1opb:B (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    38395 1opb:C (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    38396 1opb:D (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    38397 1opi:A (-1.00) BS01 peptide ? GO:0003676 ... P26368 12718882
    38398 1opj:A (1.75) BS01 STI 2.7.10.2 GO:0004672 ... P00520 12654251 BindingDB: IC50=10.8nM
    38399 1opj:B (1.75) BS01 STI 2.7.10.2 GO:0004672 ... P00520 12654251 BindingDB: IC50=10.8nM
    38400 1opk:A (1.8) BS01 P16 2.7.10.2 GO:0004672 ... P00520 12654251

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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