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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    36201 1nx9:A (2.2) BS01 AIC 3.1.1.43 GO:0008239 ... Q8VRK8 16377627
    36202 1nx9:B (2.2) BS01 AIC 3.1.1.43 GO:0008239 ... Q8VRK8 16377627
    36203 1nx9:C (2.2) BS01 AIC 3.1.1.43 GO:0008239 ... Q8VRK8 16377627
    36204 1nx9:D (2.2) BS01 AIC 3.1.1.43 GO:0008239 ... Q8VRK8 16377627
    36205 1nxc:A (1.51) BS01 MAN 3.2.1.113 GO:0004571 ... P45700 15102839
    36206 1nxd:1 (1.9) BS01 AZI ? GO:0030246 ... P02866 15159564
    36207 1nxd:1 (1.9) BS02 AZI ? GO:0030246 ... P02866 15159564
    36208 1nxd:1 (1.9) BS03 AZI ? GO:0030246 ... P02866 15159564
    36209 1nxd:1 (1.9) BS04 MN ? GO:0030246 ... P02866 15159564
    36210 1nxd:1 (1.9) BS05 MN ? GO:0030246 ... P02866 15159564
    36211 1nxd:1 (1.9) BS06 AZI ? GO:0030246 ... P02866 15159564
    36212 1nxd:2 (1.9) BS01 AZI ? GO:0030246 ... P02866 15159564
    36213 1nxd:2 (1.9) BS02 AZI ? GO:0030246 ... P02866 15159564
    36214 1nxd:2 (1.9) BS03 AZI ? GO:0030246 ... P02866 15159564
    36215 1nxd:2 (1.9) BS04 MN ? GO:0030246 ... P02866 15159564
    36216 1nxd:2 (1.9) BS05 MN ? GO:0030246 ... P02866 15159564
    36217 1nxd:3 (1.9) BS01 AZI ? GO:0030246 ... P02866 15159564
    36218 1nxd:3 (1.9) BS02 AZI ? GO:0030246 ... P02866 15159564
    36219 1nxd:3 (1.9) BS03 MN ? GO:0030246 ... P02866 15159564
    36220 1nxd:3 (1.9) BS04 MN ? GO:0030246 ... P02866 15159564
    36221 1nxd:4 (1.9) BS01 AZI ? GO:0030246 ... P02866 15159564
    36222 1nxd:4 (1.9) BS02 AZI ? GO:0030246 ... P02866 15159564
    36223 1nxd:4 (1.9) BS03 AZI ? GO:0030246 ... P02866 15159564
    36224 1nxd:4 (1.9) BS04 MN ? GO:0030246 ... P02866 15159564
    36225 1nxd:4 (1.9) BS05 MN ? GO:0030246 ... P02866 15159564
    36226 1nxf:A (1.85) BS01 HEM ? GO:0001666 ... P02213 12705827
    36227 1nxf:B (1.85) BS01 HEM ? GO:0001666 ... P02213 12705827
    36228 1nxg:A (2.5) BS01 NAI 2.3.3.16 GO:0004108 ... P0ABH7 12741811
    36229 1nxg:B (2.5) BS01 NAI 2.3.3.16 GO:0004108 ... P0ABH7 12741811
    36230 1nxj:A (1.9) BS01 GLV 4.1.1.112
    4.1.3.17
    GO:0008428 ... P9WGY3 12837779
    36231 1nxj:B (1.9) BS01 GLV 4.1.1.112
    4.1.3.17
    GO:0008428 ... P9WGY3 12837779
    36232 1nxj:C (1.9) BS01 GLV 4.1.1.112
    4.1.3.17
    GO:0008428 ... P9WGY3 12837779
    36233 1nxk:A (2.7) BS01 STU 2.7.11.1 GO:0000165 ... P49137 12791252
    36234 1nxk:B (2.7) BS01 STU 2.7.11.1 GO:0000165 ... P49137 12791252
    36235 1nxk:C (2.7) BS01 STU 2.7.11.1 GO:0000165 ... P49137 12791252
    36236 1nxk:D (2.7) BS01 STU 2.7.11.1 GO:0000165 ... P49137 12791252
    36237 1nxp:A (1.82) BS01 PHS ? GO:0000160 ... A0A0H2UQ68 15090529
    36238 1nxt:A (2.34) BS01 XE ? GO:0000160 ... A0A0H2UQ68 15090529
    36239 1nxy:A (1.6) BS01 SM2 3.5.2.6 GO:0005515 ... P62593 12859188 PDBbind: -logKd/Ki=7.19, Ki=64nM
    36240 1nxy:A (1.6) BS02 SM2 3.5.2.6 GO:0005515 ... P62593 12859188 PDBbind: -logKd/Ki=7.19, Ki=64nM
    36241 1ny0:A (1.75) BS01 NBF 3.5.2.6 GO:0005515 ... P62593 12859188 PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    36242 1ny2:2 (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 12598231
    36243 1ny2:2 (2.3) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 12598231
    36244 1ny3:A (3.0) BS01 ADP 2.7.11.1 GO:0000165 ... P49137 12791252
    36245 1ny5:A (2.4) BS01 ADP ? GO:0000160 ... O67198 14561776
    36246 1ny5:B (2.4) BS01 ADP ? GO:0000160 ... O67198 14561776
    36247 1ny6:A (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36248 1ny6:B (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36249 1ny6:C (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36250 1ny6:D (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36251 1ny6:E (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36252 1ny6:F (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36253 1ny6:G (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36254 1ny6:H (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36255 1ny6:I (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36256 1ny6:J (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36257 1ny6:K (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36258 1ny6:L (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36259 1ny6:M (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36260 1ny6:N (3.1) BS01 ADP ? GO:0005524 ... O67198 14561776
    36261 1nya:A (-1.00) BS01 CA ? GO:0005509 ... P06495 12755706
    36262 1nya:A (-1.00) BS02 CA ? GO:0005509 ... P06495 12755706
    36263 1nya:A (-1.00) BS03 CA ? GO:0005509 ... P06495 12755706
    36264 1nyk:A (1.31) BS01 FES ? GO:0016020 ... Q5SGZ9 12809486
    36265 1nyk:B (1.31) BS01 FES ? GO:0016020 ... Q5SGZ9 12809486
    36266 1nym:A (1.2) BS01 CXB 3.5.2.6 GO:0005515 ... P62593 12859188 PDBbind: -logKd/Ki=5.40, Ki=4.0uM
    36267 1nyp:A (-1.00) BS01 ZN ? N/A P48059 12794636
    36268 1nyp:A (-1.00) BS02 ZN ? N/A P48059 12794636
    36269 1nyq:A (3.2) BS01 ZN 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    36270 1nyq:A (3.2) BS02 TSB 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    36271 1nyq:B (3.2) BS01 ZN 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    36272 1nyq:B (3.2) BS02 TSB 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    36273 1nyr:A (2.8) BS01 ZN 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    36274 1nyr:A (2.8) BS02 ZN 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    36275 1nyr:A (2.8) BS03 ATP 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    36276 1nyr:A (2.8) BS04 THR 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    36277 1nyr:B (2.8) BS01 ZN 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    36278 1nyr:B (2.8) BS02 ATP 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    36279 1nyr:B (2.8) BS03 THR 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    36280 1nyt:A (1.5) BS01 NAP 1.1.1.25 GO:0000166 ... P15770 12637497
    36281 1nyt:B (1.5) BS01 NAP 1.1.1.25 GO:0000166 ... P15770 12637497
    36282 1nyt:C (1.5) BS01 NAP 1.1.1.25 GO:0000166 ... P15770 12637497
    36283 1nyt:D (1.5) BS01 NAP 1.1.1.25 GO:0000166 ... P15770 12637497
    36284 1nyw:A (1.6) BS01 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36285 1nyw:A (1.6) BS02 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36286 1nyw:B (1.6) BS01 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36287 1nyw:B (1.6) BS02 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36288 1nyx:A (2.65) BS01 DRF ? GO:0003677 ... P37231 12672231 PDBbind: -logKd/Ki=7.04, IC50=0.092uM
    BindingDB: EC50=575nM, Ki=90nM
    36289 1nyy:A (1.9) BS01 105 3.5.2.6 GO:0005515 ... P62593 12859188 PDBbind: -logKd/Ki=4.68, Ki=21uM
    36290 1nz2:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    36291 1nz3:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    36292 1nz4:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    36293 1nz5:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    36294 1nz7:A (2.4) BS01 901 3.1.3.48 GO:0004725 ... P18031 12749891 PDBbind: -logKd/Ki=7.12, Ki=0.076uM
    BindingDB: Ki=76nM
    36295 1nzb:A (3.1) BS01 dna ? GO:0003677 ... P06956 12954782
    36296 1nzb:A (3.1) BS02 dna ? GO:0003677 ... P06956 12954782
    36297 1nzb:B (3.1) BS01 dna ? GO:0003677 ... P06956 12954782
    36298 1nzb:B (3.1) BS02 dna ? GO:0003677 ... P06956 12954782
    36299 1nzb:E (3.1) BS01 dna ? GO:0003677 ... P06956 12954782
    36300 1nzb:E (3.1) BS02 dna ? GO:0003677 ... P06956 12954782
    36301 1nzb:F (3.1) BS01 dna ? GO:0003677 ... P06956 12954782
    36302 1nzb:F (3.1) BS02 dna ? GO:0003677 ... P06956 12954782
    36303 1nzc:A (1.8) BS01 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36304 1nzc:A (1.8) BS02 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36305 1nzc:B (1.8) BS01 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36306 1nzc:B (1.8) BS02 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36307 1nzc:C (1.8) BS01 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36308 1nzc:C (1.8) BS02 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36309 1nzc:D (1.8) BS01 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36310 1nzc:D (1.8) BS02 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    36311 1nzd:A (2.0) BS01 UPG 2.4.1.27 GO:0006304 ... P04547 12860129
    36312 1nzf:A (2.1) BS01 UPG 2.4.1.27 GO:0006304 ... P04547 12860129
    36313 1nzi:A (1.5) BS01 CA 3.4.21.42 GO:0005509 ... P09871 12788922
    36314 1nzi:A (1.5) BS02 MG 3.4.21.42 GO:0005509 ... P09871 12788922
    36315 1nzi:B (1.5) BS01 CA 3.4.21.42 GO:0005509 ... P09871 12788922
    36316 1nzi:B (1.5) BS02 MG 3.4.21.42 GO:0005509 ... P09871 12788922
    36317 1nzj:A (1.5) BS01 ZN 6.1.1.- GO:0000166 ... P27305 15003446
    36318 1nzl:B (1.9) BS01 peptide 2.7.10.2 N/A P00524 12706723
    36319 1nzq:H (2.18) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 12781189
    36320 1nzq:H (2.18) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 12781189
    36321 1nzq:H (2.18) BS03 162 3.4.21.5 GO:0004252 ... P00734 12781189 MOAD: ic50=11nM
    PDBbind: -logKd/Ki=7.96, IC50=11nM
    36322 1nzr:A (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    36323 1nzr:B (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    36324 1nzr:C (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    36325 1nzr:D (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    36326 1nzv:B (2.1) BS01 peptide 2.7.10.2 N/A P00524 12706723
    36327 1nzw:A (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36328 1nzw:B (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36329 1nzw:C (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36330 1nzw:D (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36331 1nzw:E (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36332 1nzw:F (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36333 1nzw:G (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36334 1nzw:H (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36335 1nzx:A (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36336 1nzx:B (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36337 1nzx:C (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36338 1nzx:D (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36339 1nzx:E (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36340 1nzx:F (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36341 1nzx:G (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36342 1nzx:H (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36343 1nzy:A (1.8) BS01 CA 3.8.1.7 GO:0003824 ... A5JTM5 8679561
    36344 1nzy:A (1.8) BS02 BCA 3.8.1.7 GO:0003824 ... A5JTM5 8679561 MOAD: Kd=2uM
    36345 1nzy:A (1.8) BS03 BCA 3.8.1.7 GO:0003824 ... A5JTM5 8679561 MOAD: Kd=2uM
    36346 1nzy:B (1.8) BS01 BCA 3.8.1.7 GO:0003824 ... A5JTM5 8679561 MOAD: Kd=2uM
    36347 1nzy:B (1.8) BS02 CA 3.8.1.7 GO:0003824 ... A5JTM5 8679561
    36348 1nzy:B (1.8) BS03 PO4 3.8.1.7 GO:0003824 ... A5JTM5 8679561
    36349 1nzy:B (1.8) BS04 BCA 3.8.1.7 GO:0003824 ... A5JTM5 8679561 MOAD: Kd=2uM
    36350 1nzy:C (1.8) BS01 BCA 3.8.1.7 GO:0003824 ... A5JTM5 8679561 MOAD: Kd=2uM
    36351 1nzy:C (1.8) BS02 CA 3.8.1.7 GO:0003824 ... A5JTM5 8679561
    36352 1nzy:C (1.8) BS03 BCA 3.8.1.7 GO:0003824 ... A5JTM5 8679561 MOAD: Kd=2uM
    36353 1nzz:A (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36354 1nzz:B (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36355 1nzz:C (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36356 1nzz:D (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36357 1nzz:E (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36358 1nzz:F (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36359 1nzz:G (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36360 1nzz:H (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36361 1o00:A (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36362 1o00:B (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36363 1o00:C (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36364 1o00:D (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36365 1o00:E (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36366 1o00:F (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36367 1o00:G (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36368 1o00:H (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36369 1o01:A (2.15) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36370 1o01:B (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    36371 1o01:B (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36372 1o01:C (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    36373 1o01:C (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36374 1o01:D (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    36375 1o01:D (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36376 1o01:E (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    36377 1o01:E (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36378 1o01:F (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    36379 1o01:F (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36380 1o01:G (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    36381 1o01:G (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36382 1o01:H (2.15) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36383 1o02:A (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36384 1o02:B (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36385 1o02:C (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36386 1o02:D (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36387 1o02:E (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36388 1o02:F (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36389 1o02:G (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36390 1o02:H (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    36391 1o03:A (1.4) BS01 G16 5.4.2.6 GO:0000287 ... P71447 12637673
    36392 1o03:A (1.4) BS02 MG 5.4.2.6 GO:0000287 ... P71447 12637673
    36393 1o04:A (1.42) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36394 1o04:B (1.42) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36395 1o04:C (1.42) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36396 1o04:D (1.42) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36397 1o04:E (1.42) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36398 1o04:F (1.42) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36399 1o04:G (1.42) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    36400 1o04:H (1.42) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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