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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    33801 1n4w:A (0.92) BS02 FAD 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 16604066
    33802 1n50:A (2.9) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 10329702
    33803 1n50:A (2.9) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 10329702
    33804 1n50:B (2.9) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 10329702
    33805 1n50:B (2.9) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 10329702
    33806 1n51:A (2.3) BS01 peptide 3.4.11.9 GO:0004177 ... P15034 15388923
    33807 1n51:A (2.3) BS02 MN 3.4.11.9 GO:0004177 ... P15034 15388923
    33808 1n51:A (2.3) BS03 MN 3.4.11.9 GO:0004177 ... P15034 15388923
    33809 1n52:A (2.11) BS01 MG ? GO:0000184 ... Q09161 12434151
    33810 1n52:B (2.11) BS01 GTG ? GO:0000184 ... P52298 12434151
    33811 1n55:A (0.83) BS01 PGA 5.3.1.1 GO:0004807 ... P48499 12522213
    33812 1n56:A (2.4) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33813 1n56:A (2.4) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33814 1n56:A (2.4) BS03 MG 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33815 1n56:A (2.4) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33816 1n56:A (2.4) BS05 ATP 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33817 1n56:B (2.4) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33818 1n56:B (2.4) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33819 1n56:B (2.4) BS03 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33820 1n56:B (2.4) BS04 dna 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33821 1n56:B (2.4) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33822 1n56:B (2.4) BS06 MG 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33823 1n56:B (2.4) BS07 ATP 2.7.7.7 GO:0000287 ... Q97W02 15023344
    33824 1n59:A (2.95) BS01 peptide ? N/A P01901 12479822
    33825 1n59:C (2.95) BS01 peptide ? N/A P01901 12479822
    33826 1n5a:A (2.85) BS01 peptide ? N/A P01899 12479822
    33827 1n5a:D (2.85) BS01 peptide ? N/A P01899 12479822
    33828 1n5a:G (2.85) BS01 peptide ? N/A P01899 12479822
    33829 1n5a:J (2.85) BS01 peptide ? N/A P01899 12479822
    33830 1n5d:A (2.3) BS01 NDP 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... Q28960 11279087
    33831 1n5i:A (1.85) BS01 TMP 2.7.4.9 GO:0000287 ... P9WKE1 12662932
    33832 1n5i:A (1.85) BS02 ATP 2.7.4.9 GO:0000287 ... P9WKE1 12662932
    33833 1n5j:A (1.85) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 12662932
    33834 1n5j:A (1.85) BS02 TYD 2.7.4.9 GO:0000287 ... P9WKE1 12662932
    33835 1n5j:A (1.85) BS03 TTP 2.7.4.9 GO:0000287 ... P9WKE1 12662932
    33836 1n5k:A (2.1) BS01 TMP 2.7.4.9 GO:0000287 ... P9WKE1 12662932
    33837 1n5k:B (2.1) BS01 TMP 2.7.4.9 GO:0000287 ... P9WKE1 12662932
    33838 1n5l:A (2.3) BS01 TMP 2.7.4.9 GO:0000287 ... P9WKE1 12662932
    33839 1n5l:B (2.3) BS01 TYD 2.7.4.9 GO:0000287 ... P9WKE1 12662932
    33840 1n5m:A (2.2) BS01 GMN 3.1.1.7 GO:0001919 ... P21836 12505979
    33841 1n5m:B (2.2) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 12505979
    33842 1n5n:A (1.8) BS01 ZN 3.5.1.88 GO:0006412 ... Q9I7A8 12823970
    33843 1n5n:B (1.8) BS01 ZN 3.5.1.88 GO:0006412 ... Q9I7A8 12823970
    33844 1n5q:B (1.74) BS01 TNC ? N/A Q53908 12514126
    33845 1n5r:A (2.25) BS01 PRM 3.1.1.7 GO:0001919 ... P21836 12505979 MOAD: Ki=2.2uM
    PDBbind: -logKd/Ki=5.66, Ki=2.2uM
    33846 1n5s:B (1.7) BS01 ADL ? N/A Q53908 12514126
    33847 1n5t:B (1.9) BS01 OAL ? N/A Q53908 12514126
    33848 1n5u:A (1.9) BS01 HEM ? GO:0003677 ... P02768 11866438
    33849 1n5v:A (2.24) BS01 NOM ? N/A Q53908 12514126
    33850 1n5w:A (1.5) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33851 1n5w:A (1.5) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33852 1n5w:A (1.5) BS03 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33853 1n5w:B (1.5) BS01 CUM 1.2.5.3 GO:0005506 ... P19919 12475995
    33854 1n5w:B (1.5) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33855 1n5w:C (1.5) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33856 1n5w:D (1.5) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33857 1n5w:D (1.5) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33858 1n5w:D (1.5) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33859 1n5w:D (1.5) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33860 1n5w:E (1.5) BS01 CUM 1.2.5.3 GO:0005506 ... P19919 12475995
    33861 1n5w:E (1.5) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33862 1n5w:F (1.5) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33863 1n5x:A (2.8) BS01 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33864 1n5x:A (2.8) BS02 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33865 1n5x:A (2.8) BS03 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33866 1n5x:A (2.8) BS04 TEI 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831 BindingDB: IC50=10.0nM, Ki=120nM
    33867 1n5x:B (2.8) BS01 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33868 1n5x:B (2.8) BS02 FES 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33869 1n5x:B (2.8) BS03 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831
    33870 1n5x:B (2.8) BS04 TEI 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 12421831 BindingDB: IC50=10.0nM, Ki=120nM
    33871 1n5y:A (3.1) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 12456667
    33872 1n5y:A (3.1) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 12456667
    33873 1n5y:A (3.1) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 12456667
    33874 1n5z:A (2.7) BS01 peptide ? N/A P80667 12453410
    33875 1n5z:B (2.7) BS01 peptide ? N/A P80667 12453410
    33876 1n60:A (1.19) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33877 1n60:A (1.19) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33878 1n60:A (1.19) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33879 1n60:A (1.19) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33880 1n60:B (1.19) BS01 OMO 1.2.5.3 GO:0005506 ... P19919 12475995
    33881 1n60:B (1.19) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33882 1n60:C (1.19) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33883 1n60:D (1.19) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33884 1n60:D (1.19) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33885 1n60:D (1.19) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33886 1n60:D (1.19) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33887 1n60:E (1.19) BS01 OMO 1.2.5.3 GO:0005506 ... P19919 12475995
    33888 1n60:E (1.19) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33889 1n60:F (1.19) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33890 1n61:A (1.3) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33891 1n61:A (1.3) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33892 1n61:A (1.3) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33893 1n61:A (1.3) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33894 1n61:B (1.3) BS01 CUN 1.2.5.3 GO:0005506 ... P19919 12475995
    33895 1n61:B (1.3) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33896 1n61:C (1.3) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33897 1n61:D (1.3) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33898 1n61:D (1.3) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33899 1n61:D (1.3) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33900 1n61:E (1.3) BS01 CUN 1.2.5.3 GO:0005506 ... P19919 12475995
    33901 1n61:E (1.3) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33902 1n61:F (1.3) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33903 1n62:A (1.09) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33904 1n62:A (1.09) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33905 1n62:A (1.09) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33906 1n62:A (1.09) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33907 1n62:B (1.09) BS01 CUB 1.2.5.3 GO:0005506 ... P19919 12475995
    33908 1n62:B (1.09) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33909 1n62:C (1.09) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33910 1n62:D (1.09) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33911 1n62:D (1.09) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33912 1n62:D (1.09) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33913 1n62:D (1.09) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33914 1n62:E (1.09) BS01 CUB 1.2.5.3 GO:0005506 ... P19919 12475995
    33915 1n62:E (1.09) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33916 1n62:F (1.09) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33917 1n63:A (1.21) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33918 1n63:A (1.21) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33919 1n63:A (1.21) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33920 1n63:A (1.21) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33921 1n63:B (1.21) BS01 CUN 1.2.5.3 GO:0005506 ... P19919 12475995
    33922 1n63:B (1.21) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33923 1n63:C (1.21) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33924 1n63:D (1.21) BS01 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33925 1n63:D (1.21) BS02 FES 1.2.5.3 GO:0008805 ... P19921 12475995
    33926 1n63:D (1.21) BS03 MCN 1.2.5.3 GO:0008805 ... P19921 12475995
    33927 1n63:D (1.21) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 12475995
    33928 1n63:E (1.21) BS01 CUN 1.2.5.3 GO:0005506 ... P19919 12475995
    33929 1n63:E (1.21) BS02 MCN 1.2.5.3 GO:0005506 ... P19919 12475995
    33930 1n63:F (1.21) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 12475995
    33931 1n64:H (2.34) BS01 peptide N/A N/A N/A 12574359
    33932 1n64:L (2.34) BS01 peptide N/A N/A N/A 12574359
    33933 1n65:A (-1.00) BS01 CE ? GO:0005499 ... P02633 14596622
    33934 1n67:A (1.9) BS01 MG ? GO:0005618 ... Q53653 12485987
    33935 1n67:A (1.9) BS02 MG ? GO:0005618 ... Q53653 12485987
    33936 1n67:A (1.9) BS03 MG ? GO:0005618 ... Q53653 12485987
    33937 1n68:A (1.7) BS01 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    33938 1n68:A (1.7) BS02 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    33939 1n68:A (1.7) BS03 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    33940 1n68:A (1.7) BS04 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    33941 1n68:A (1.7) BS05 C2C 1.16.3.4 GO:0004322 ... P36649 12794077
    33942 1n6a:A (1.7) BS01 SAM 2.1.1.364 GO:0005694 ... Q8WTS6 12514135
    33943 1n6b:A (2.3) BS01 HEM 1.14.14.1 GO:0004497 ... P00179 12767218
    33944 1n6b:A (2.3) BS02 DMZ 1.14.14.1 GO:0004497 ... P00179 12767218 MOAD: Kd=20uM
    33945 1n6c:A (2.3) BS01 SAM 2.1.1.364 GO:0005694 ... Q8WTS6 12514135
    33946 1n6d:A (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33947 1n6d:A (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33948 1n6d:A (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33949 1n6d:B (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33950 1n6d:B (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33951 1n6d:B (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33952 1n6d:C (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33953 1n6d:C (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33954 1n6d:C (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33955 1n6d:D (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33956 1n6d:D (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33957 1n6d:D (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33958 1n6d:E (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33959 1n6d:E (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33960 1n6d:E (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33961 1n6d:F (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33962 1n6d:F (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33963 1n6d:F (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33964 1n6e:A (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33965 1n6e:A (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33966 1n6e:C (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33967 1n6e:C (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33968 1n6e:E (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33969 1n6e:E (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33970 1n6e:G (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33971 1n6e:G (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33972 1n6e:I (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33973 1n6e:I (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33974 1n6e:K (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    33975 1n6e:K (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    33976 1n6f:A (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33977 1n6f:B (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33978 1n6f:C (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33979 1n6f:D (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33980 1n6f:E (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33981 1n6f:F (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    33982 1n6h:A (1.51) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33983 1n6h:A (1.51) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 12433916
    33984 1n6i:A (1.6) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33985 1n6i:A (1.6) BS02 GDP 3.6.5.2 GO:0003924 ... P20339 12433916
    33986 1n6j:A (2.2) BS01 dna ? GO:0000977 ... Q02080 12700764
    33987 1n6j:A (2.2) BS02 dna ? GO:0000977 ... Q02080 12700764
    33988 1n6j:A (2.2) BS03 peptide ? GO:0000977 ... Q02080 12700764
    33989 1n6j:B (2.2) BS01 dna ? GO:0000977 ... Q02080 12700764
    33990 1n6j:B (2.2) BS02 dna ? GO:0000977 ... Q02080 12700764
    33991 1n6j:B (2.2) BS03 peptide ? GO:0000977 ... Q02080 12700764
    33992 1n6k:A (1.55) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33993 1n6k:A (1.55) BS02 GDP 3.6.5.2 GO:0003924 ... P20339 12433916
    33994 1n6k:A (1.55) BS03 AF3 3.6.5.2 GO:0003924 ... P20339 12433916
    33995 1n6l:A (1.6) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    33996 1n6l:A (1.6) BS02 GTP 3.6.5.2 GO:0003924 ... P20339 12433916
    33997 1n6m:A (2.5) BS01 ADP 3.6.4.- GO:0003777 ... P20480 14532111
    33998 1n6m:B (2.5) BS01 ADP 3.6.4.- GO:0003777 ... P20480 14532111
    33999 1n6n:A (1.6) BS01 MG 3.6.5.2 GO:0003924 ... P20339 12433916
    34000 1n6n:A (1.6) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 12433916

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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