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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3201 1beu:B (1.9) BS01 PLS 4.2.1.20 GO:0000162 ... P0A2K1 9692955
    3202 1bev:1 (3.0) BS01 MYR 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    N/A P12915 7773791
    3203 1bex:A (2.3) BS01 CU ? GO:0005507 ... P00282 10089343
    3204 1bex:A (2.3) BS02 CU ? GO:0005507 ... P00282 10089343
    3205 1bex:A (2.3) BS03 RBU ? GO:0005507 ... P00282 10089343
    3206 1bex:B (2.3) BS01 RBU ? GO:0005507 ... P00282 10089343
    3207 1bex:B (2.3) BS02 CU ? GO:0005507 ... P00282 10089343
    3208 1bex:B (2.3) BS03 CU ? GO:0005507 ... P00282 10089343
    3209 1bex:B (2.3) BS04 RBU ? GO:0005507 ... P00282 10089343
    3210 1bez:A (2.1) BS01 ACY 3.8.1.5 GO:0003824 ... P22643 9790663
    3211 1bf2:A (2.0) BS01 CA 3.2.1.68 GO:0004553 ... P10342 9719642
    3212 1bf3:A (2.2) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 9578477
    3213 1bf4:A (1.6) BS01 dna ? GO:0003677 ... P13123 9731772
    3214 1bf4:A (1.6) BS02 dna ? GO:0003677 ... P13123 9731772
    3215 1bf5:A (2.9) BS01 dna ? GO:0003677 ... P42224 9630226
    3216 1bf5:A (2.9) BS02 dna ? GO:0003677 ... P42224 9630226
    3217 1bf6:A (1.7) BS01 ZN 3.1.-.- GO:0008270 ... P45548 9548740
    3218 1bf6:A (1.7) BS02 ZN 3.1.-.- GO:0008270 ... P45548 9548740
    3219 1bf6:B (1.7) BS01 ZN 3.1.-.- GO:0008270 ... P45548 9548740
    3220 1bf6:B (1.7) BS02 ZN 3.1.-.- GO:0008270 ... P45548 9548740
    3221 1bfb:A (1.9) BS01 IDS ? GO:0008083 ... P09038 8599088
    3222 1bfb:A (1.9) BS02 SGN ? GO:0008083 ... P09038 8599088
    3223 1bfc:A (2.2) BS01 SGN ? GO:0008083 ... P09038 8599088
    3224 1bfc:A (2.2) BS02 IDS ? GO:0008083 ... P09038 8599088
    3225 1bfc:A (2.2) BS03 SGN ? GO:0008083 ... P09038 8599088
    3226 1bfd:A (1.6) BS01 CA 4.1.1.7 GO:0000287 ... P20906 9665697
    3227 1bfd:A (1.6) BS02 MG 4.1.1.7 GO:0000287 ... P20906 9665697
    3228 1bfd:A (1.6) BS03 TPP 4.1.1.7 GO:0000287 ... P20906 9665697
    3229 1bff:A (2.0) BS01 PO4 ? GO:0008083 ... P09038 15299950
    3230 1bfk:A (2.3) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9675126
    3231 1bfk:A (2.3) BS02 CCN 3.4.21.62 GO:0004252 ... P00780 9675126
    3232 1bfk:A (2.3) BS03 CCN 3.4.21.62 GO:0004252 ... P00780 9675126
    3233 1bfk:A (2.3) BS04 CCN 3.4.21.62 GO:0004252 ... P00780 9675126
    3234 1bfn:A (2.07) BS01 GLC 3.2.1.2 GO:0000272 ... P10538 9677422
    3235 1bfn:A (2.07) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 9677422
    3236 1bfr:A (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3237 1bfr:A (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3238 1bfr:A (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3239 1bfr:B (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3240 1bfr:B (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3241 1bfr:B (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3242 1bfr:C (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3243 1bfr:C (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3244 1bfr:C (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3245 1bfr:D (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3246 1bfr:D (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3247 1bfr:D (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3248 1bfr:E (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3249 1bfr:E (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3250 1bfr:E (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3251 1bfr:F (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3252 1bfr:F (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3253 1bfr:F (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3254 1bfr:G (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3255 1bfr:G (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3256 1bfr:G (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3257 1bfr:H (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3258 1bfr:H (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3259 1bfr:H (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3260 1bfr:I (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3261 1bfr:I (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3262 1bfr:I (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3263 1bfr:J (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3264 1bfr:J (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3265 1bfr:J (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3266 1bfr:K (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3267 1bfr:K (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3268 1bfr:K (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3269 1bfr:L (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3270 1bfr:L (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3271 1bfr:L (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3272 1bfr:M (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3273 1bfr:M (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3274 1bfr:M (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3275 1bfr:N (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3276 1bfr:N (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3277 1bfr:N (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3278 1bfr:O (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3279 1bfr:O (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3280 1bfr:O (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3281 1bfr:P (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3282 1bfr:P (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3283 1bfr:P (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3284 1bfr:Q (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3285 1bfr:Q (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3286 1bfr:Q (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3287 1bfr:R (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3288 1bfr:R (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3289 1bfr:R (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3290 1bfr:S (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3291 1bfr:S (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3292 1bfr:S (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3293 1bfr:T (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3294 1bfr:T (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3295 1bfr:T (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3296 1bfr:U (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3297 1bfr:U (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3298 1bfr:U (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3299 1bfr:V (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3300 1bfr:V (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3301 1bfr:V (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3302 1bfr:W (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3303 1bfr:W (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3304 1bfr:W (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3305 1bfr:X (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3306 1bfr:X (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3307 1bfr:X (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    3308 1bfu:A (2.2) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9675126
    3309 1bfv:H (2.1) BS01 STG ? GO:0002250 ... P18529 9261086 MOAD: Ka~10000000M^-1
    3310 1bfv:L (2.1) BS01 ZN ? GO:0002250 ... P01631 9261086
    3311 1bfv:L (2.1) BS02 STG ? GO:0002250 ... P01631 9261086
    3312 1bfx:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 10095768
    3313 1bfy:A (-1.00) BS01 FE 1.18.1.1 GO:0005506 ... P00268 N/A
    3314 1bg0:A (1.86) BS01 NO3 2.7.3.3 GO:0003824 ... P51541 9671698
    3315 1bg0:A (1.86) BS02 NO3 2.7.3.3 GO:0003824 ... P51541 9671698
    3316 1bg0:A (1.86) BS03 ADP 2.7.3.3 GO:0003824 ... P51541 9671698
    3317 1bg0:A (1.86) BS04 DAR 2.7.3.3 GO:0003824 ... P51541 9671698
    3318 1bg1:A (2.25) BS01 dna ? GO:0003677 ... P42227 9671298
    3319 1bg2:A (1.8) BS01 ADP ? GO:0003777 ... P33176 8606779
    3320 1bg3:A (2.8) BS01 BGC 2.7.1.1 GO:0001666 ... P05708 9665168
    3321 1bg3:A (2.8) BS02 G6P 2.7.1.1 GO:0001666 ... P05708 9665168
    3322 1bg3:A (2.8) BS03 BGC 2.7.1.1 GO:0001666 ... P05708 9665168
    3323 1bg3:A (2.8) BS04 G6P 2.7.1.1 GO:0001666 ... P05708 9665168
    3324 1bg3:B (2.8) BS01 BGC 2.7.1.1 GO:0001666 ... P05708 9665168
    3325 1bg3:B (2.8) BS02 G6P 2.7.1.1 GO:0001666 ... P05708 9665168
    3326 1bg3:B (2.8) BS03 BGC 2.7.1.1 GO:0001666 ... P05708 9665168
    3327 1bg3:B (2.8) BS04 G6P 2.7.1.1 GO:0001666 ... P05708 9665168
    3328 1bg4:A (1.75) BS01 GOL 3.2.1.8 GO:0004553 ... P56588 9792094
    3329 1bg4:A (1.75) BS02 GOL 3.2.1.8 GO:0004553 ... P56588 9792094
    3330 1bg4:A (1.75) BS03 GOL 3.2.1.8 GO:0004553 ... P56588 9792094
    3331 1bg4:A (1.75) BS04 GOL 3.2.1.8 GO:0004553 ... P56588 9792094
    3332 1bg4:A (1.75) BS05 GOL 3.2.1.8 GO:0004553 ... P56588 9792094
    3333 1bg4:A (1.75) BS06 GOL 3.2.1.8 GO:0004553 ... P56588 9792094
    3334 1bg9:A (2.8) BS01 BGC 3.2.1.1 GO:0004556 ... P04063 9571044
    3335 1bg9:A (2.8) BS02 DAF 3.2.1.1 GO:0004556 ... P04063 9571044
    3336 1bg9:A (2.8) BS03 CA 3.2.1.1 GO:0004556 ... P04063 9571044
    3337 1bg9:A (2.8) BS04 CA 3.2.1.1 GO:0004556 ... P04063 9571044
    3338 1bg9:A (2.8) BS05 CA 3.2.1.1 GO:0004556 ... P04063 9571044
    3339 1bg9:A (2.8) BS06 AF1 3.2.1.1 GO:0004556 ... P04063 9571044
    3340 1bgb:A (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 9705308
    3341 1bgb:A (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 9705308
    3342 1bgb:B (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 9705308
    3343 1bgb:B (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 9705308
    3344 1bgg:B (2.3) BS01 GCO 3.2.1.21 GO:0004553 ... P22073 9466926
    3345 1bgg:C (2.3) BS01 GCO 3.2.1.21 GO:0004553 ... P22073 9466926
    3346 1bgg:D (2.3) BS01 GCO 3.2.1.21 GO:0004553 ... P22073 9466926
    3347 1bgj:A (3.0) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 9694855
    3348 1bgn:A (2.0) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 9694855
    3349 1bgo:A (2.3) BS01 I10 3.4.22.38 GO:0006508 ... P43235 N/A PDBbind: -logKd/Ki=8.46, Ki=3.5nM
    3350 1bgp:A (1.9) BS01 CA 1.11.1.7 GO:0004601 ... Q40069 9442067
    3351 1bgp:A (1.9) BS02 NA 1.11.1.7 GO:0004601 ... Q40069 9442067
    3352 1bgp:A (1.9) BS03 HEM 1.11.1.7 GO:0004601 ... Q40069 9442067
    3353 1bgq:A (2.5) BS01 RDC ? GO:0005524 ... P02829 9925731 MOAD: Kd=2.7nM
    PDBbind: -logKd/Ki=8.57, Kd=2.7nM
    BindingDB: IC50=2e+2nM
    3354 1bgv:A (1.9) BS01 GLU 1.4.1.2 GO:0004352 ... P24295 8263917
    3355 1bgy:A (3.0) BS01 peptide 1.10.2.2 GO:0005739 ... P31800 9651245
    3356 1bgy:C (3.0) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 9651245
    3357 1bgy:C (3.0) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 9651245
    3358 1bgy:D (3.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 9651245
    3359 1bgy:J (3.0) BS01 peptide 1.10.2.2 GO:0005739 ... P00130 9651245
    3360 1bgy:M (3.0) BS01 peptide 1.10.2.2 GO:0005739 ... P31800 9651245
    3361 1bgy:O (3.0) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 9651245
    3362 1bgy:O (3.0) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 9651245
    3363 1bgy:P (3.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 9651245
    3364 1bgy:Q (3.0) BS01 FES 7.1.1.8 GO:0008121 ... P13272 9651245
    3365 1bgy:V (3.0) BS01 peptide 1.10.2.2 GO:0005739 ... P00130 9651245
    3366 1bh2:A (2.1) BS01 MG ? GO:0003924 ... P10824 9705312
    3367 1bh2:A (2.1) BS02 GSP ? GO:0003924 ... P10824 9705312
    3368 1bh3:A (2.19) BS01 C8E ? GO:0006811 ... P39767 9684893
    3369 1bh5:A (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    3370 1bh5:A (2.2) BS02 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    3371 1bh5:A (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    3372 1bh5:A (2.2) BS04 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    3373 1bh5:B (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    3374 1bh5:B (2.2) BS02 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    3375 1bh5:B (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    3376 1bh5:B (2.2) BS04 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    3377 1bh5:C (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    3378 1bh5:C (2.2) BS02 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    3379 1bh5:C (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    3380 1bh5:C (2.2) BS04 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    3381 1bh5:D (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    3382 1bh5:D (2.2) BS02 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    3383 1bh5:D (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    3384 1bh5:D (2.2) BS04 GTX 4.4.1.5 GO:0004462 ... Q04760 9705294
    3385 1bh6:A (1.75) BS01 CA 3.4.21.62 GO:0004252 ... P00781 9826175
    3386 1bh6:A (1.75) BS02 1BH 3.4.21.62 GO:0004252 ... P00781 9826175
    3387 1bh9:B (2.6) BS01 PMB ? GO:0005634 ... Q15544 9695952
    3388 1bhc:J (2.7) BS01 SCN ? GO:0004867 ... P00974 10089400
    3389 1bhf:A (1.8) BS01 peptide 2.7.10.2 N/A P06239 9685372
    3390 1bhg:A (2.53) BS01 MAN 3.2.1.31 GO:0004553 ... P08236 8599764
    3391 1bhg:A (2.53) BS02 MAN 3.2.1.31 GO:0004553 ... P08236 8599764
    3392 1bhg:B (2.53) BS01 BMA 3.2.1.31 GO:0004553 ... P08236 8599764
    3393 1bhg:B (2.53) BS02 MAN 3.2.1.31 GO:0004553 ... P08236 8599764
    3394 1bhm:A (2.2) BS01 dna 3.1.21.4 GO:0000287 ... P23940 7624794
    3395 1bhm:A (2.2) BS02 dna 3.1.21.4 GO:0000287 ... P23940 7624794
    3396 1bhm:B (2.2) BS01 dna 3.1.21.4 GO:0000287 ... P23940 7624794
    3397 1bhm:B (2.2) BS02 dna 3.1.21.4 GO:0000287 ... P23940 7624794
    3398 1bhn:A (2.4) BS01 35G 2.7.4.6 GO:0004550 ... P52174 10329774
    3399 1bhn:A (2.4) BS02 GDP 2.7.4.6 GO:0004550 ... P52174 10329774
    3400 1bhn:B (2.4) BS01 35G 2.7.4.6 GO:0004550 ... P52174 10329774

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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