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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    31001 1m75:B (2.3) BS02 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    31002 1m76:A (2.15) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 N/A
    31003 1m76:A (2.15) BS02 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    31004 1m76:B (2.15) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 N/A
    31005 1m76:B (2.15) BS02 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    31006 1m78:A (1.71) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    31007 1m78:A (1.71) BS02 CLZ 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=52nM
    31008 1m78:B (1.71) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    31009 1m78:B (1.71) BS02 CLZ 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=52nM
    31010 1m79:A (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    31011 1m79:A (1.7) BS02 MQ1 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=320nM
    31012 1m79:B (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    31013 1m79:B (1.7) BS02 MQ1 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=320nM
    31014 1m7a:A (1.76) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    31015 1m7a:A (1.76) BS02 MQU 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=9nM
    31016 1m7a:B (1.76) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    31017 1m7a:B (1.76) BS02 MQU 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: ic50=9nM
    31018 1m7b:A (2.0) BS01 MG ? GO:0003924 ... P61587 12163169
    31019 1m7b:A (2.0) BS02 GTP ? GO:0003924 ... P61587 12163169
    31020 1m7d:A (2.3) BS01 MAG ? GO:0046872 ... A2NHM3 12427018 PDBbind: -logKd/Ki=6.23, Kd=0.59uM
    31021 1m7d:B (2.3) BS01 RAE ? GO:0002250 ... P01801 12427018 PDBbind: -logKd/Ki=6.23, Kd=0.59uM
    31022 1m7e:A (2.45) BS01 peptide ? N/A P98078 12826668
    31023 1m7e:B (2.45) BS01 peptide ? N/A P98078 12826668
    31024 1m7e:C (2.45) BS01 peptide ? N/A P98078 12826668
    31025 1m7g:A (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    31026 1m7g:A (1.43) BS02 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    31027 1m7g:A (1.43) BS03 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    31028 1m7g:A (1.43) BS04 AV2 2.7.1.25 GO:0000103 ... Q12657 12427029
    31029 1m7g:A (1.43) BS05 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    31030 1m7g:B (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    31031 1m7g:B (1.43) BS02 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    31032 1m7g:B (1.43) BS03 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    31033 1m7g:C (1.43) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    31034 1m7g:C (1.43) BS02 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    31035 1m7g:C (1.43) BS03 AV2 2.7.1.25 GO:0000103 ... Q12657 12427029
    31036 1m7g:C (1.43) BS04 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    31037 1m7g:D (1.43) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    31038 1m7g:D (1.43) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    31039 1m7h:A (2.0) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    31040 1m7h:A (2.0) BS02 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    31041 1m7h:B (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    31042 1m7h:B (2.0) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    31043 1m7h:C (2.0) BS01 SO4 2.7.1.25 GO:0000103 ... Q12657 12427029
    31044 1m7h:C (2.0) BS02 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    31045 1m7h:D (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... Q12657 12427029
    31046 1m7h:D (2.0) BS02 ADX 2.7.1.25 GO:0000103 ... Q12657 12427029
    31047 1m7i:B (2.5) BS01 RAM ? GO:0002250 ... P01801 12427018 PDBbind: -logKd/Ki=5.40, Kd=4.0uM
    31048 1m7j:A (1.5) BS01 ZN 3.5.1.81 GO:0016787 ... Q9AGH8 12454005
    31049 1m7j:A (1.5) BS02 ZN 3.5.1.81 GO:0016787 ... Q9AGH8 12454005
    31050 1m7p:A (2.4) BS01 G3H 5.3.1.1 GO:0004807 ... Q07412 12454456
    31051 1m7p:B (2.4) BS01 G3H 5.3.1.1 GO:0004807 ... Q07412 12454456
    31052 1m7q:A (2.4) BS01 DQO 2.7.11.24 GO:0000077 ... Q16539 12482439 MOAD: ic50=2.6nM
    PDBbind: -logKd/Ki=8.59, IC50=2.6nM
    BindingDB: IC50=2.6nM
    31053 1m7s:A (1.8) BS01 HEM 1.11.1.6 GO:0003824 ... P46206 12557185
    31054 1m7s:B (1.8) BS01 HEM 1.11.1.6 GO:0003824 ... P46206 12557185
    31055 1m7s:C (1.8) BS01 HEM 1.11.1.6 GO:0003824 ... P46206 12557185
    31056 1m7s:D (1.8) BS01 HEM 1.11.1.6 GO:0003824 ... P46206 12557185
    31057 1m7v:A (1.95) BS01 ARG 1.14.14.47 GO:0004517 ... O34453 12220171
    31058 1m7v:A (1.95) BS02 HEM 1.14.14.47 GO:0004517 ... O34453 12220171
    31059 1m7v:A (1.95) BS03 THG 1.14.14.47 GO:0004517 ... O34453 12220171
    31060 1m7y:A (1.6) BS01 PPG 1.4.-.-
    4.4.1.14
    GO:0003824 ... P37821 12228256 PDBbind: -logKd/Ki=10.96, Kd=0.011nM
    31061 1m7z:A (2.14) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 12220171
    31062 1m7z:A (2.14) BS02 HAR 1.14.14.47 GO:0004517 ... O34453 12220171
    31063 1m7z:A (2.14) BS03 THG 1.14.14.47 GO:0004517 ... O34453 12220171
    31064 1m83:A (2.2) BS01 ATP 6.1.1.2 GO:0000166 ... P00953 12473451 MOAD: Kd=0.4mM
    PDBbind: -logKd/Ki=3.40, Kd=0.4mM
    31065 1m85:A (2.0) BS01 HEM 1.11.1.6 GO:0004096 ... P42321 7791219
    31066 1m8d:A (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    31067 1m8d:A (2.35) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    31068 1m8d:A (2.35) BS03 CLW 1.14.13.39 GO:0004517 ... P29477 12437348 MOAD: Kd~4.3uM
    31069 1m8d:B (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    31070 1m8d:B (2.35) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    31071 1m8d:B (2.35) BS03 CLW 1.14.13.39 GO:0004517 ... P29477 12437348 MOAD: Kd~4.3uM
    31072 1m8e:A (2.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    31073 1m8e:A (2.9) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    31074 1m8e:A (2.9) BS03 7NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    31075 1m8e:B (2.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    31076 1m8e:B (2.9) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    31077 1m8e:B (2.9) BS03 7NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    31078 1m8f:A (2.4) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    31079 1m8g:A (2.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    31080 1m8h:A (2.85) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    31081 1m8h:A (2.85) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    31082 1m8h:A (2.85) BS03 6NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    31083 1m8h:B (2.85) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    31084 1m8h:B (2.85) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    31085 1m8h:B (2.85) BS03 6NI 1.14.13.39 GO:0004517 ... P29477 12437348 BindingDB: IC50=20000nM
    31086 1m8i:A (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    31087 1m8i:A (2.7) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    31088 1m8i:A (2.7) BS03 5NI 1.14.13.39 GO:0004517 ... P29477 12437348
    31089 1m8i:B (2.7) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 12437348
    31090 1m8i:B (2.7) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 12437348
    31091 1m8i:B (2.7) BS03 5NI 1.14.13.39 GO:0004517 ... P29477 12437348
    31092 1m8j:A (2.4) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    31093 1m8k:A (3.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    31094 1m8k:B (3.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    31095 1m8k:C (3.0) BS01 NAD 2.7.7.1 GO:0000309 ... O26253 12810729
    31096 1m8p:A (2.6) BS01 PPS 2.7.7.4 GO:0000103 ... Q12650 12426581
    31097 1m8p:B (2.6) BS01 PPS 2.7.7.4 GO:0000103 ... Q12650 12426581
    31098 1m8p:C (2.6) BS01 PPS 2.7.7.4 GO:0000103 ... Q12650 12426581
    31099 1m8r:A (1.9) BS01 CD 3.1.1.4 GO:0004623 ... O42191 12504079
    31100 1m8s:A (1.9) BS01 CD 3.1.1.4 GO:0004623 ... O42191 12504079
    31101 1m8t:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    31102 1m8t:B (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    31103 1m8t:C (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    31104 1m8t:D (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    31105 1m8t:E (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    31106 1m8t:F (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    31107 1m8v:A (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31108 1m8v:A (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31109 1m8v:B (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31110 1m8v:B (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31111 1m8v:C (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31112 1m8v:C (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31113 1m8v:D (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31114 1m8v:D (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31115 1m8v:E (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31116 1m8v:E (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31117 1m8v:F (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31118 1m8v:F (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31119 1m8v:G (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31120 1m8v:G (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31121 1m8v:H (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31122 1m8v:H (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31123 1m8v:I (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31124 1m8v:I (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31125 1m8v:J (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31126 1m8v:J (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31127 1m8v:K (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31128 1m8v:K (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31129 1m8v:L (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31130 1m8v:L (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31131 1m8v:M (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31132 1m8v:M (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31133 1m8v:M (2.6) BS03 U ? GO:0000398 ... Q9V0Y8 12409299
    31134 1m8v:N (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    31135 1m8v:N (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    31136 1m8w:A (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    31137 1m8w:A (2.2) BS02 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    31138 1m8w:B (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    31139 1m8w:B (2.2) BS02 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    31140 1m8x:A (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    31141 1m8x:B (2.2) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=500nM
    31142 1m8y:A (2.6) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=160nM
    31143 1m8y:B (2.6) BS01 rna ? GO:0003723 ... Q14671 12202039 PDBbind: Kd=160nM
    31144 1m90:1 (2.8) BS01 rna ? GO:0003735 ... P60619 12185246
    31145 1m90:2 (2.8) BS01 rna ? GO:0003723 ... P32410 12185246
    31146 1m90:3 (2.8) BS01 rna ? GO:0003735 ... P22452 12185246
    31147 1m90:4 (2.8) BS01 rna ? GO:0000049 ... P32411 12185246
    31148 1m90:4 (2.8) BS02 MG ? GO:0000049 ... P32411 12185246
    31149 1m90:C (2.8) BS01 rna ? GO:0002181 ... P20276 12185246
    31150 1m90:D (2.8) BS01 rna ? GO:0003723 ... P20279 12185246
    31151 1m90:E (2.8) BS01 rna ? GO:0003723 ... P12735 12185246
    31152 1m90:F (2.8) BS01 rna ? GO:0000049 ... P14124 12185246
    31153 1m90:F (2.8) BS02 rna ? GO:0000049 ... P14124 12185246
    31154 1m90:G (2.8) BS01 rna ? GO:0002181 ... P14135 12185246
    31155 1m90:H (2.8) BS01 rna ? GO:0001682 ... P12743 12185246
    31156 1m90:J (2.8) BS01 rna ? GO:0000027 ... P60617 12185246
    31157 1m90:K (2.8) BS01 rna ? GO:0003729 ... P29198 12185246
    31158 1m90:L (2.8) BS01 rna ? GO:0003735 ... P22450 12185246
    31159 1m90:M (2.8) BS01 rna ? GO:0003735 ... P12737 12185246
    31160 1m90:N (2.8) BS01 rna ? GO:0002181 ... P60618 12185246
    31161 1m90:O (2.8) BS01 rna ? GO:0000027 ... P14123 12185246
    31162 1m90:O (2.8) BS02 rna ? GO:0000027 ... P14123 12185246
    31163 1m90:P (2.8) BS01 rna ? GO:0003723 ... P12733 12185246
    31164 1m90:Q (2.8) BS01 rna ? GO:0003723 ... P14119 12185246
    31165 1m90:R (2.8) BS01 rna ? GO:0003735 ... P12734 12185246
    31166 1m90:R (2.8) BS02 rna ? GO:0003735 ... P12734 12185246
    31167 1m90:S (2.8) BS01 rna ? GO:0002181 ... P10970 12185246
    31168 1m90:T (2.8) BS01 rna ? GO:0000027 ... P12732 12185246
    31169 1m90:U (2.8) BS01 rna ? GO:0002181 ... P10972 12185246
    31170 1m90:U (2.8) BS02 MG ? GO:0002181 ... P10972 12185246
    31171 1m90:V (2.8) BS01 rna ? GO:0003735 ... P14116 12185246
    31172 1m90:W (2.8) BS01 rna ? GO:0003735 ... P10971 12185246
    31173 1m90:X (2.8) BS01 rna ? GO:0000463 ... P14121 12185246
    31174 1m90:X (2.8) BS02 rna ? GO:0000463 ... P14121 12185246
    31175 1m90:Y (2.8) BS01 rna ? GO:0002181 ... P18138 12185246
    31176 1m90:Z (2.8) BS01 rna ? GO:0000166 ... P12736 12185246
    31177 1m90:Z (2.8) BS02 MG ? GO:0000166 ... P12736 12185246
    31178 1m99:A (2.3) BS01 GTS 2.5.1.18 GO:0004364 ... P08515 12596270
    31179 1m9a:A (2.1) BS01 GTX 2.5.1.18 GO:0004364 ... P08515 12596270
    31180 1m9b:A (2.6) BS01 IBG 2.5.1.18 GO:0004364 ... P08515 12596270
    31181 1m9h:A (2.0) BS01 NAD 1.1.1.346 GO:0005737 ... P06632 14718658
    31182 1m9i:A (2.65) BS01 CA ? GO:0001786 ... P08133 12534274
    31183 1m9i:A (2.65) BS02 CA ? GO:0001786 ... P08133 12534274
    31184 1m9i:A (2.65) BS03 CA ? GO:0001786 ... P08133 12534274
    31185 1m9i:A (2.65) BS04 CA ? GO:0001786 ... P08133 12534274
    31186 1m9i:A (2.65) BS05 CA ? GO:0001786 ... P08133 12534274
    31187 1m9j:A (2.43) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348
    31188 1m9j:A (2.43) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 12437348
    31189 1m9j:A (2.43) BS03 CLW 1.14.13.39 GO:0004517 ... P29474 12437348 MOAD: Kd~0.6uM
    BindingDB: IC50=8700nM
    31190 1m9j:B (2.43) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348
    31191 1m9j:B (2.43) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 12437348
    31192 1m9j:B (2.43) BS03 CLW 1.14.13.39 GO:0004517 ... P29474 12437348 MOAD: Kd~0.6uM
    BindingDB: IC50=8700nM
    31193 1m9k:A (2.01) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348
    31194 1m9k:A (2.01) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 12437348
    31195 1m9k:A (2.01) BS03 7NI 1.14.13.39 GO:0004517 ... P29474 12437348 MOAD: Kd~250uM
    BindingDB: IC50=2500nM
    31196 1m9k:B (2.01) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348
    31197 1m9k:B (2.01) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 12437348
    31198 1m9k:B (2.01) BS03 7NI 1.14.13.39 GO:0004517 ... P29474 12437348 MOAD: Kd~250uM
    BindingDB: IC50=2500nM
    31199 1m9m:A (1.96) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 12437348
    31200 1m9m:A (1.96) BS02 HEM 1.14.13.39 GO:0004517 ... P29474 12437348

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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