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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30601 1m32:C (2.2) BS03 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    30602 1m32:D (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    30603 1m32:D (2.2) BS02 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    30604 1m32:E (2.2) BS01 PO4 2.6.1.37 GO:0008483 ... P96060 12403617
    30605 1m32:E (2.2) BS02 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    30606 1m32:E (2.2) BS03 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    30607 1m32:F (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    30608 1m32:F (2.2) BS02 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    30609 1m33:A (1.7) BS01 3OH 3.1.1.85 GO:0005515 ... P13001 12732651
    30610 1m34:A (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    30611 1m34:A (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    30612 1m34:B (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30613 1m34:B (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    30614 1m34:B (2.3) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30615 1m34:C (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    30616 1m34:C (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    30617 1m34:D (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30618 1m34:D (2.3) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30619 1m34:D (2.3) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    30620 1m34:E (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    30621 1m34:E (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30622 1m34:E (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30623 1m34:E (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30624 1m34:F (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    30625 1m34:F (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30626 1m34:F (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30627 1m34:F (2.3) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    30628 1m34:F (2.3) BS05 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30629 1m34:G (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    30630 1m34:G (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30631 1m34:G (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30632 1m34:G (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30633 1m34:H (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30634 1m34:H (2.3) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30635 1m34:H (2.3) BS03 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    30636 1m34:H (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30637 1m34:I (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    30638 1m34:I (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    30639 1m34:J (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30640 1m34:J (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    30641 1m34:J (2.3) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30642 1m34:K (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    30643 1m34:K (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    30644 1m34:L (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30645 1m34:L (2.3) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    30646 1m34:L (2.3) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    30647 1m34:M (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    30648 1m34:M (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30649 1m34:M (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30650 1m34:M (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30651 1m34:N (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30652 1m34:N (2.3) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30653 1m34:N (2.3) BS03 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    30654 1m34:N (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30655 1m34:O (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    30656 1m34:O (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30657 1m34:O (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30658 1m34:O (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30659 1m34:P (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    30660 1m34:P (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    30661 1m34:P (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30662 1m34:P (2.3) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    30663 1m34:P (2.3) BS05 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    30664 1m35:A (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30665 1m35:A (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30666 1m35:B (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30667 1m35:B (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30668 1m35:C (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30669 1m35:C (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30670 1m35:D (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30671 1m35:D (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30672 1m35:E (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30673 1m35:E (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30674 1m35:F (2.4) BS01 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30675 1m35:F (2.4) BS02 MN 3.4.11.9 GO:0004177 ... P15034 12777807
    30676 1m36:A (-1.00) BS01 ZN 2.3.1.48 GO:0004402 ... Q92794 N/A
    30677 1m38:A (1.8) BS01 CO 3.6.1.1 GO:0000287 ... P00817 N/A
    30678 1m38:A (1.8) BS02 CO 3.6.1.1 GO:0000287 ... P00817 N/A
    30679 1m38:B (1.8) BS01 CO 3.6.1.1 GO:0000287 ... P00817 N/A
    30680 1m3h:A (2.05) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 15610848
    30681 1m3h:A (2.05) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 15610848
    30682 1m3h:A (2.05) BS03 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 15610848
    30683 1m3q:A (1.9) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 15610848
    30684 1m3q:A (1.9) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 15610848
    30685 1m3q:A (1.9) BS03 ANG 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 15610848
    30686 1m3u:A (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    30687 1m3u:A (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    30688 1m3u:B (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    30689 1m3u:B (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    30690 1m3u:C (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    30691 1m3u:C (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    30692 1m3u:D (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    30693 1m3u:D (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    30694 1m3u:E (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    30695 1m3u:E (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    30696 1m3u:F (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    30697 1m3u:F (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    30698 1m3u:G (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    30699 1m3u:G (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    30700 1m3u:H (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    30701 1m3u:H (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    30702 1m3u:I (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    30703 1m3u:I (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    30704 1m3u:J (1.8) BS01 MG 2.1.2.11 GO:0000287 ... P31057 12906829
    30705 1m3u:J (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    30706 1m3v:A (-1.00) BS01 ZN ? N/A P70662 12727888
    30707 1m3v:A (-1.00) BS02 ZN ? N/A P70662 12727888
    30708 1m3x:L (2.55) BS01 BCL ? GO:0009772 ... P0C0Y8 12167672
    30709 1m3x:L (2.55) BS02 BCL ? GO:0009772 ... P0C0Y8 12167672
    30710 1m3x:L (2.55) BS03 BCL ? GO:0009772 ... P0C0Y8 12167672
    30711 1m3x:L (2.55) BS04 BPH ? GO:0009772 ... P0C0Y8 12167672
    30712 1m3x:L (2.55) BS05 U10 ? GO:0009772 ... P0C0Y8 12167672
    30713 1m3x:L (2.55) BS06 FE ? GO:0009772 ... P0C0Y8 12167672
    30714 1m3x:M (2.55) BS01 BCL ? GO:0009772 ... P0C0Y9 12167672
    30715 1m3x:M (2.55) BS02 BCL ? GO:0009772 ... P0C0Y9 12167672
    30716 1m3x:M (2.55) BS03 BPH ? GO:0009772 ... P0C0Y9 12167672
    30717 1m3x:M (2.55) BS04 FE ? GO:0009772 ... P0C0Y9 12167672
    30718 1m3x:M (2.55) BS05 BCL ? GO:0009772 ... P0C0Y9 12167672
    30719 1m3x:M (2.55) BS06 BPH ? GO:0009772 ... P0C0Y9 12167672
    30720 1m3x:M (2.55) BS07 U10 ? GO:0009772 ... P0C0Y9 12167672
    30721 1m3x:M (2.55) BS08 SPO ? GO:0009772 ... P0C0Y9 12167672
    30722 1m3x:M (2.55) BS09 CDL ? GO:0009772 ... P0C0Y9 12167672
    30723 1m3z:A (1.87) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 12501183
    30724 1m3z:B (1.87) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 12501183
    30725 1m3z:C (1.87) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 12501183
    30726 1m3z:D (1.87) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 12501183
    30727 1m40:A (0.85) BS01 CB4 3.5.2.6 GO:0005515 ... P62593 11996574
    30728 1m43:A (2.4) BS01 peptide 3.4.23.39 GO:0004190 ... P46925 N/A
    30729 1m43:B (2.4) BS01 peptide 3.4.23.39 GO:0004190 ... P46925 N/A
    30730 1m45:A (1.65) BS01 peptide ? GO:0000142 ... P53141 12554638
    30731 1m46:A (2.103) BS01 peptide ? GO:0000142 ... P53141 12554638
    30732 1m48:A (1.95) BS01 FRG ? GO:0002250 ... P60568 12582206 MOAD: Kd=8.2uM
    PDBbind: -logKd/Ki=5.09, Kd=8.2uM
    30733 1m48:B (1.95) BS01 FRG ? GO:0002250 ... P60568 12582206 MOAD: Kd=8.2uM
    30734 1m49:A (2.0) BS01 CMM ? GO:0002250 ... P60568 12582206
    30735 1m49:B (2.0) BS01 CMM ? GO:0002250 ... P60568 12582206
    30736 1m4a:A (2.18) BS01 MPE ? GO:0002250 ... P60568 12582206
    30737 1m4b:A (2.15) BS01 NMP ? GO:0002250 ... P60568 12582206
    30738 1m4d:A (1.8) BS01 TOY 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30739 1m4d:A (1.8) BS02 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30740 1m4d:A (1.8) BS03 PAP 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30741 1m4d:B (1.8) BS01 TOY 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30742 1m4d:B (1.8) BS02 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30743 1m4g:A (1.8) BS01 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30744 1m4g:A (1.8) BS02 RIO 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30745 1m4g:B (1.8) BS01 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30746 1m4g:B (1.8) BS02 RIO 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30747 1m4g:B (1.8) BS03 PAP 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30748 1m4h:A (2.1) BS01 peptide 3.4.23.46 GO:0004190 ... P56817 12206667
    30749 1m4h:B (2.1) BS01 peptide 3.4.23.46 GO:0004190 ... P56817 12206667
    30750 1m4i:A (1.5) BS01 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30751 1m4i:A (1.5) BS02 KAN 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30752 1m4i:A (1.5) BS03 PAP 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30753 1m4i:B (1.5) BS01 COA 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30754 1m4i:B (1.5) BS02 KAN 2.3.1.- GO:0005886 ... P9WQG9 12161746
    30755 1m4l:A (1.25) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 12554943
    30756 1m4m:A (2.8) BS01 ZN ? GO:0000086 ... O70201 10949038
    30757 1m4m:A (2.8) BS02 ZN ? GO:0000086 ... O70201 10949038
    30758 1m4n:A (2.01) BS01 PLP 1.4.-.-
    4.4.1.14
    GO:0003824 ... P37821 12686108
    30759 1m4n:A (2.01) BS02 AAD 1.4.-.-
    4.4.1.14
    GO:0003824 ... P37821 12686108
    30760 1m4p:A (-1.00) BS01 peptide ? GO:0015031 ... Q99816 12379843
    30761 1m4q:A (-1.00) BS01 peptide ? GO:0015031 ... Q99816 12379843
    30762 1m51:A (2.25) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 14552798
    30763 1m51:A (2.25) BS02 TSX 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 14552798 MOAD: ic50=18.8uM
    PDBbind: -logKd/Ki=4.73, IC50=18.8uM
    30764 1m52:A (2.6) BS01 P17 2.7.10.2 GO:0004672 ... P00520 12154025
    30765 1m52:B (2.6) BS01 P17 2.7.10.2 GO:0004672 ... P00520 12154025
    30766 1m54:A (2.9) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 12173932
    30767 1m54:A (2.9) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 12173932
    30768 1m54:B (2.9) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 12173932
    30769 1m54:B (2.9) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 12173932
    30770 1m54:C (2.9) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 12173932
    30771 1m54:C (2.9) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 12173932
    30772 1m54:D (2.9) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 12173932
    30773 1m54:D (2.9) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 12173932
    30774 1m54:E (2.9) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 12173932
    30775 1m54:E (2.9) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 12173932
    30776 1m54:F (2.9) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 12173932
    30777 1m54:F (2.9) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 12173932
    30778 1m55:A (1.4) BS01 ZN ? N/A Q9YJC1 12191478
    30779 1m55:A (1.4) BS02 ZN ? N/A Q9YJC1 12191478
    30780 1m55:B (1.4) BS01 ZN ? N/A Q9YJC1 12191478
    30781 1m55:B (1.4) BS02 ZN ? N/A Q9YJC1 12191478
    30782 1m56:A (2.3) BS01 CU 7.1.1.9 GO:0004129 ... P33517 12144789
    30783 1m56:A (2.3) BS02 MG 7.1.1.9 GO:0004129 ... P33517 12144789
    30784 1m56:A (2.3) BS03 CA 7.1.1.9 GO:0004129 ... P33517 12144789
    30785 1m56:A (2.3) BS04 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    30786 1m56:A (2.3) BS05 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    30787 1m56:B (2.3) BS01 CU 7.1.1.9 GO:0004129 ... Q03736 12144789
    30788 1m56:B (2.3) BS02 CU 7.1.1.9 GO:0004129 ... Q03736 12144789
    30789 1m56:G (2.3) BS01 CU 7.1.1.9 GO:0004129 ... P33517 12144789
    30790 1m56:G (2.3) BS02 MG 7.1.1.9 GO:0004129 ... P33517 12144789
    30791 1m56:G (2.3) BS03 CA 7.1.1.9 GO:0004129 ... P33517 12144789
    30792 1m56:G (2.3) BS04 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    30793 1m56:G (2.3) BS05 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    30794 1m56:H (2.3) BS01 CU 7.1.1.9 GO:0004129 ... Q03736 12144789
    30795 1m56:H (2.3) BS02 CU 7.1.1.9 GO:0004129 ... Q03736 12144789
    30796 1m57:A (3.0) BS01 CU 7.1.1.9 GO:0004129 ... P33517 12144789
    30797 1m57:A (3.0) BS02 MG 7.1.1.9 GO:0004129 ... P33517 12144789
    30798 1m57:A (3.0) BS03 CA 7.1.1.9 GO:0004129 ... P33517 12144789
    30799 1m57:A (3.0) BS04 HEA 7.1.1.9 GO:0004129 ... P33517 12144789
    30800 1m57:A (3.0) BS05 HEA 7.1.1.9 GO:0004129 ... P33517 12144789

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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