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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    29601 1loc:C (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    29602 1loc:C (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    29603 1loc:C (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    29604 1loc:D (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527
    29605 1loc:E (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    29606 1loc:E (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    29607 1loc:E (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    29608 1loc:F (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527
    29609 1loc:G (2.05) BS01 peptide ? GO:0005515 ... P04122 8144527
    29610 1loc:G (2.05) BS02 CA ? GO:0005515 ... P04122 8144527
    29611 1loc:G (2.05) BS03 MN ? GO:0005515 ... P04122 8144527
    29612 1loc:H (2.05) BS01 peptide ? GO:0005537 ... P12306 8144527
    29613 1lod:A (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    29614 1lod:A (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    29615 1lod:A (2.05) BS03 MUR ? GO:0005515 ... P04122 8144527
    29616 1lod:B (2.05) BS01 MUR ? GO:0005537 ... P12306 8144527
    29617 1lod:C (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    29618 1lod:C (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    29619 1lod:C (2.05) BS03 MUR ? GO:0005515 ... P04122 8144527
    29620 1lod:D (2.05) BS01 MUR ? GO:0005537 ... P12306 8144527
    29621 1lod:E (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    29622 1lod:E (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    29623 1lod:E (2.05) BS03 MUR ? GO:0005515 ... P04122 8144527
    29624 1lod:F (2.05) BS01 MUR ? GO:0005537 ... P12306 8144527
    29625 1lod:G (2.05) BS01 CA ? GO:0005515 ... P04122 8144527
    29626 1lod:G (2.05) BS02 MN ? GO:0005515 ... P04122 8144527
    29627 1lod:G (2.05) BS03 MUR ? GO:0005515 ... P04122 8144527
    29628 1lod:H (2.05) BS01 MUR ? GO:0005537 ... P12306 8144527
    29629 1loe:A (1.9) BS01 CA ? GO:0005515 ... P04122 2380988
    29630 1loe:A (1.9) BS02 MN ? GO:0005515 ... P04122 2380988
    29631 1loe:C (1.9) BS01 CA ? GO:0005515 ... P04122 2380988
    29632 1loe:C (1.9) BS02 MN ? GO:0005515 ... P04122 2380988
    29633 1lof:A (2.3) BS01 MAN ? GO:0005515 ... P04122 1730588
    29634 1lof:A (2.3) BS02 CA ? GO:0005515 ... P04122 1730588
    29635 1lof:A (2.3) BS03 MN ? GO:0005515 ... P04122 1730588
    29636 1lof:B (2.3) BS01 MAN ? GO:0005537 ... P12306 1730588
    29637 1lof:C (2.3) BS01 MAN ? GO:0005515 ... P04122 1730588
    29638 1lof:C (2.3) BS02 CA ? GO:0005515 ... P04122 1730588
    29639 1lof:C (2.3) BS03 MN ? GO:0005515 ... P04122 1730588
    29640 1lof:D (2.3) BS01 MAN ? GO:0005537 ... P12306 1730588
    29641 1log:A (2.1) BS01 MAN ? GO:0005515 ... P04122 2211692
    29642 1log:A (2.1) BS02 CA ? GO:0005515 ... P04122 2211692
    29643 1log:A (2.1) BS03 MN ? GO:0005515 ... P04122 2211692
    29644 1log:B (2.1) BS01 MAN ? GO:0005537 ... P12306 2211692
    29645 1log:C (2.1) BS01 MAN ? GO:0005515 ... P04122 2211692
    29646 1log:C (2.1) BS02 CA ? GO:0005515 ... P04122 2211692
    29647 1log:C (2.1) BS03 MN ? GO:0005515 ... P04122 2211692
    29648 1log:D (2.1) BS01 MAN ? GO:0005537 ... P12306 2211692
    29649 1loh:A (2.0) BS01 BDP 4.2.2.1 GO:0003824 ... Q54873 11991948
    29650 1loh:A (2.0) BS02 BDP 4.2.2.1 GO:0003824 ... Q54873 11991948
    29651 1loh:A (2.0) BS03 BDP 4.2.2.1 GO:0003824 ... Q54873 11991948
    29652 1loj:A (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29653 1loj:B (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29654 1loj:C (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29655 1loj:D (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29656 1loj:E (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29657 1loj:F (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29658 1loj:G (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29659 1loj:H (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29660 1loj:I (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29661 1loj:J (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29662 1loj:K (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29663 1loj:L (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29664 1loj:M (1.9) BS01 URI ? GO:0000398 ... O26745 12649441
    29665 1loj:N (1.9) BS01 U ? GO:0000398 ... O26745 12649441
    29666 1lok:A (1.2) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 12176384
    29667 1lok:A (1.2) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 12176384
    29668 1lok:A (1.2) BS03 NA 3.4.11.10 GO:0006508 ... Q01693 12176384
    29669 1lok:A (1.2) BS04 SCN 3.4.11.10 GO:0006508 ... Q01693 12176384
    29670 1lol:A (1.9) BS01 BU2 4.1.1.23 GO:0004590 ... O26232 12011084
    29671 1lol:A (1.9) BS02 XMP 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=0.41uM
    PDBbind: -logKd/Ki=6.39, Ki=0.41uM
    29672 1lol:B (1.9) BS01 BU2 4.1.1.23 GO:0004590 ... O26232 12011084
    29673 1lol:B (1.9) BS02 XMP 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=0.41uM
    PDBbind: -logKd/Ki=6.39, Ki=0.41uM
    29674 1lom:A (1.72) BS01 CA ? GO:0030246 ... P81180 12054761
    29675 1lon:A (2.1) BS01 MG 6.3.4.4 GO:0000166 ... P28650 12004071
    29676 1lon:A (2.1) BS02 IMO 6.3.4.4 GO:0000166 ... P28650 12004071
    29677 1lon:A (2.1) BS03 HDA 6.3.4.4 GO:0000166 ... P28650 12004071
    29678 1lon:A (2.1) BS04 GDP 6.3.4.4 GO:0000166 ... P28650 12004071
    29679 1loo:A (2.2) BS01 GTP 6.3.4.4 GO:0000166 ... P28650 12004071
    29680 1lop:A (1.8) BS01 peptide 5.2.1.8 GO:0000413 ... P23869 8601841
    29681 1loq:A (1.5) BS01 U 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    29682 1lor:A (1.6) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    29683 1los:A (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29684 1los:A (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29685 1los:B (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29686 1los:B (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29687 1los:C (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29688 1los:C (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29689 1los:D (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29690 1los:D (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29691 1lot:B (2.5) BS01 ATP 3.6.4.- GO:0000287 ... P68135 12119014
    29692 1lov:A (1.55) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 12122018
    29693 1low:A (1.9) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 12122018
    29694 1lox:A (2.4) BS01 FE2 1.13.11.-
    1.13.11.12
    1.13.11.31
    1.13.11.33
    GO:0001503 ... P12530 9406550
    29695 1lox:A (2.4) BS02 RS7 1.13.11.-
    1.13.11.12
    1.13.11.31
    1.13.11.33
    GO:0001503 ... P12530 9406550 MOAD: Ki=3uM
    PDBbind: -logKd/Ki=5.52, Ki=3uM
    29696 1loy:A (1.55) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 12122018
    29697 1lp1:B (2.3) BS01 MG ? GO:0019865 ... P38507 12604795
    29698 1lp4:A (1.86) BS01 MG 2.7.11.1 GO:0004672 ... P28523 15740749
    29699 1lp4:A (1.86) BS02 ANP 2.7.11.1 GO:0004672 ... P28523 15740749
    29700 1lp6:A (1.9) BS01 C5P 4.1.1.23 GO:0004590 ... O26232 12011084
    29701 1lp6:B (1.9) BS01 C5P 4.1.1.23 GO:0004590 ... O26232 12011084
    29702 1lp9:A (2.0) BS01 peptide ? N/A P04439 14563323
    29703 1lp9:E (2.0) BS01 peptide ? N/A P01849 14563323
    29704 1lp9:H (2.0) BS01 peptide ? N/A P04439 14563323
    29705 1lp9:L (2.0) BS01 peptide ? N/A P01849 14563323
    29706 1lpa:B (3.04) BS01 CA 3.1.1.3 GO:0004806 ... P16233 8479519
    29707 1lpb:B (2.46) BS01 CA 3.1.1.3 GO:0004806 ... P16233 7893686
    29708 1lpb:B (2.46) BS02 MUP 3.1.1.3 GO:0004806 ... P16233 7893686
    29709 1lpc:A (1.7) BS01 CMP 3.2.2.22 GO:0006952 ... P24476 15553110
    29710 1lpd:A (1.7) BS01 ADE 3.2.2.22 GO:0006952 ... P24476 15553110
    29711 1lpf:A (2.8) BS01 FAD 1.8.1.4 GO:0004148 ... P14218 8487301
    29712 1lpf:A (2.8) BS02 FAD 1.8.1.4 GO:0004148 ... P14218 8487301
    29713 1lpf:B (2.8) BS01 FAD 1.8.1.4 GO:0004148 ... P14218 8487301
    29714 1lpg:B (2.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    29715 1lpg:B (2.0) BS02 IMA 3.4.21.6 GO:0004252 ... P00742 12061878 MOAD: Ki=82nM
    PDBbind: -logKd/Ki=7.09, Ki=82nM
    BindingDB: Ki=82nM
    29716 1lph:B (2.3) BS01 peptide ? GO:0005179 ... P01308 8590022
    29717 1lph:D (2.3) BS01 peptide ? GO:0005179 ... P01308 8590022
    29718 1lpi:A (2.0) BS01 NA 3.2.1.17 GO:0003796 ... P00698 9828016
    29719 1lpk:B (2.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    29720 1lpk:B (2.2) BS02 CBB 3.4.21.6 GO:0004252 ... P00742 12061878 MOAD: Ki=28nM
    PDBbind: -logKd/Ki=7.55, Ki=28nM
    29721 1lpm:A (2.18) BS01 MPA 3.1.1.3 N/A P20261 N/A
    29722 1lpn:A (2.18) BS01 DSC 3.1.1.3 N/A P20261 8142346
    29723 1lpn:A (2.18) BS02 DSC 3.1.1.3 N/A P20261 8142346
    29724 1lpo:A (2.18) BS01 HDS 3.1.1.3 N/A P20261 8142346
    29725 1lpp:A (2.18) BS01 HDS 3.1.1.3 N/A P20261 8142346
    29726 1lpp:A (2.18) BS02 HDS 3.1.1.3 N/A P20261 8142346
    29727 1lpq:A (3.14) BS01 dna 5.6.2.1 GO:0003677 ... P11387 12209008
    29728 1lpq:A (3.14) BS02 dna 5.6.2.1 GO:0003677 ... P11387 12209008
    29729 1lps:A (2.18) BS01 MPC 3.1.1.3 N/A P20261 N/A
    29730 1lpv:A (-1.00) BS01 ZN ? GO:0005634 ... P23023 10898790
    29731 1lpv:A (-1.00) BS02 ZN ? GO:0005634 ... P23023 10898790
    29732 1lpz:B (2.4) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    29733 1lpz:B (2.4) BS02 CMB 3.4.21.6 GO:0004252 ... P00742 12061878 MOAD: Ki=25nM
    PDBbind: -logKd/Ki=7.60, Ki=25nM
    BindingDB: Ki=25nM
    29734 1lq1:A (2.3) BS01 dna ? GO:0003677 ... P06534 12176382
    29735 1lq1:A (2.3) BS02 dna ? GO:0003677 ... P06534 12176382
    29736 1lq1:B (2.3) BS01 dna ? GO:0003677 ... P06534 12176382
    29737 1lq1:C (2.3) BS01 dna ? GO:0003677 ... P06534 12176382
    29738 1lq1:D (2.3) BS01 dna ? GO:0003677 ... P06534 12176382
    29739 1lq1:D (2.3) BS02 dna ? GO:0003677 ... P06534 12176382
    29740 1lq2:A (2.7) BS01 IDD 3.2.1.21 GO:0004553 ... Q9XEI3 14597633 PDBbind: -logKd/Ki=8.77, Ki=1.7nM
    29741 1lq8:A (2.4) BS01 peptide ? GO:0004867 ... P05154 12575940
    29742 1lq8:A (2.4) BS02 peptide ? GO:0004867 ... P05154 12575940
    29743 1lq8:C (2.4) BS01 peptide ? GO:0004867 ... P05154 12575940
    29744 1lq8:E (2.4) BS01 peptide ? GO:0004867 ... P05154 12575940
    29745 1lq8:E (2.4) BS02 peptide ? GO:0004867 ... P05154 12575940
    29746 1lq8:G (2.4) BS01 peptide ? GO:0004867 ... P05154 12575940
    29747 1lqa:A (1.604) BS01 NDP ? GO:0004033 ... P0A9T4 14519207
    29748 1lqa:B (1.604) BS01 NDP ? GO:0004033 ... P0A9T4 14519207
    29749 1lqb:C (2.0) BS01 peptide ? N/A P40337 12050673
    29750 1lqd:B (2.7) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12061878
    29751 1lqd:B (2.7) BS02 CMI 3.4.21.6 GO:0004252 ... P00742 12061878 PDBbind: -logKd/Ki=8.05, Ki=9nM
    BindingDB: Ki=9nM
    29752 1lqe:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00760 12061878
    29753 1lqe:A (2.2) BS02 IMA 3.4.21.4 GO:0004252 ... P00760 12061878 MOAD: Ki=1507nM
    PDBbind: -logKd/Ki=5.82, Ki=1507nM
    29754 1lqf:A (2.5) BS01 BGD 3.1.3.48 GO:0004725 ... P18031 12119018
    29755 1lqf:B (2.5) BS01 BGD 3.1.3.48 GO:0004725 ... P18031 12119018
    29756 1lqf:C (2.5) BS01 BGD 3.1.3.48 GO:0004725 ... P18031 12119018
    29757 1lqf:D (2.5) BS01 BGD 3.1.3.48 GO:0004725 ... P18031 12119018
    29758 1lqk:A (1.35) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29759 1lqk:A (1.35) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29760 1lqk:B (1.35) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29761 1lqk:B (1.35) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29762 1lqo:A (2.0) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29763 1lqo:A (2.0) BS02 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29764 1lqo:A (2.0) BS03 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29765 1lqo:A (2.0) BS04 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29766 1lqo:B (2.0) BS01 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29767 1lqo:B (2.0) BS02 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29768 1lqo:B (2.0) BS03 PO4 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29769 1lqo:B (2.0) BS04 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29770 1lqp:A (1.19) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29771 1lqp:A (1.19) BS02 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29772 1lqp:A (1.19) BS03 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29773 1lqp:A (1.19) BS04 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29774 1lqp:B (1.19) BS01 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29775 1lqp:B (1.19) BS02 MN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29776 1lqp:B (1.19) BS03 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29777 1lqp:B (1.19) BS04 FCN 2.5.1.18 GO:0004364 ... Q9I4K6 12224946
    29778 1lqt:A (1.05) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29779 1lqt:A (1.05) BS02 ODP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29780 1lqt:B (1.05) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29781 1lqt:B (1.05) BS02 ODP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29782 1lqu:A (1.25) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29783 1lqu:A (1.25) BS02 NDP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29784 1lqu:B (1.25) BS01 FAD 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29785 1lqu:B (1.25) BS02 NDP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    29786 1lqv:C (1.6) BS01 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29787 1lqv:C (1.6) BS02 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29788 1lqv:C (1.6) BS03 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29789 1lqv:C (1.6) BS04 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29790 1lqv:C (1.6) BS05 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29791 1lqv:C (1.6) BS06 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29792 1lqv:D (1.6) BS01 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29793 1lqv:D (1.6) BS02 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29794 1lqv:D (1.6) BS03 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29795 1lqv:D (1.6) BS04 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29796 1lqv:D (1.6) BS05 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29797 1lqv:D (1.6) BS06 CA 3.4.21.69 GO:0005509 ... P04070 12034704
    29798 1lqw:A (1.87) BS01 ZN 3.5.1.88 GO:0006412 ... P68826 12126617
    29799 1lqw:B (1.87) BS01 ZN 3.5.1.88 GO:0006412 ... P68826 12126617
    29800 1lqx:A (1.8) BS01 HEM ? GO:0020037 ... P00171 12136141

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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