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BioLiP
Download all results in tab-seperated text for 94 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9bh5:AA (2.63) BS01 rna N/A N/A P46769 39209556
    2 9bh5:AB (2.63) BS01 rna N/A N/A P48154 39209556
    3 9bh5:AC (2.63) BS01 rna N/A N/A P51403 39209556
    4 9bh5:AD (2.63) BS01 rna N/A N/A P48152 39209556
    5 9bh5:AE (2.63) BS01 rna N/A N/A Q9N3X2 39209556
    6 9bh5:AF (2.63) BS01 rna N/A N/A P49041 39209556
    7 9bh5:AG (2.63) BS01 rna N/A N/A Q9NEN6 39209556
    8 9bh5:AH (2.63) BS01 rna N/A N/A Q23312 39209556
    9 9bh5:AI (2.63) BS01 rna N/A N/A P48156 39209556
    10 9bh5:AI (2.63) BS02 rna N/A N/A P48156 39209556
    11 9bh5:AJ (2.63) BS01 rna N/A N/A Q20228 39209556
    12 9bh5:AK (2.63) BS01 rna N/A N/A O01869 39209556
    13 9bh5:AL (2.63) BS01 rna N/A N/A Q20206 39209556
    14 9bh5:AM (2.63) BS01 rna N/A N/A P49196 39209556
    15 9bh5:AN (2.63) BS01 rna N/A N/A P51404 39209556
    16 9bh5:AO (2.63) BS01 rna N/A N/A P48150 39209556
    17 9bh5:AP (2.63) BS01 rna N/A N/A Q9XVP0 39209556
    18 9bh5:AP (2.63) BS02 rna N/A N/A Q9XVP0 39209556
    19 9bh5:AP (2.63) BS03 rna N/A N/A Q9XVP0 39209556
    20 9bh5:AQ (2.63) BS01 rna N/A N/A Q22054 39209556
    21 9bh5:AR (2.63) BS01 rna N/A N/A O01692 39209556
    22 9bh5:AS (2.63) BS01 rna N/A N/A O18240 39209556
    23 9bh5:AT (2.63) BS01 rna N/A N/A O18650 39209556
    24 9bh5:AU (2.63) BS01 rna N/A N/A Q8WQA8 39209556
    25 9bh5:AW (2.63) BS01 rna N/A N/A O17218 39209556
    26 9bh5:AX (2.63) BS01 rna N/A N/A Q19877 39209556
    27 9bh5:AY (2.63) BS01 rna N/A N/A Q1XFY9 39209556
    28 9bh5:AZ (2.63) BS01 rna N/A N/A P52821 39209556
    29 9bh5:Aa (2.63) BS01 rna N/A N/A O45499 39209556
    30 9bh5:Ab (2.63) BS01 rna N/A N/A Q9TXP0 39209556
    31 9bh5:Ac (2.63) BS01 rna N/A N/A Q95Y04 39209556
    32 9bh5:Ad (2.63) BS01 rna N/A N/A P90983 39209556
    33 9bh5:Ae (2.63) BS01 rna N/A N/A Q18231 39209556
    34 9bh5:Af (2.63) BS01 rna N/A N/A P37165 39209556
    35 9bh5:CA (2.63) BS01 rna N/A N/A Q9XVF7 39209556
    36 9bh5:CA (2.63) BS02 rna N/A N/A Q9XVF7 39209556
    37 9bh5:CB (2.63) BS01 rna N/A N/A P50880 39209556
    38 9bh5:CC (2.63) BS01 rna N/A N/A O02056 39209556
    39 9bh5:CC (2.63) BS02 rna N/A N/A O02056 39209556
    40 9bh5:CD (2.63) BS01 rna N/A N/A P49405 39209556
    41 9bh5:CD (2.63) BS02 rna N/A N/A P49405 39209556
    42 9bh5:CE (2.63) BS01 rna N/A N/A P47991 39209556
    43 9bh5:CF (2.63) BS01 rna N/A N/A O01802 39209556
    44 9bh5:CF (2.63) BS02 rna N/A N/A O01802 39209556
    45 9bh5:CG (2.63) BS01 rna N/A N/A Q966C6 39209556
    46 9bh5:CG (2.63) BS02 rna N/A N/A Q966C6 39209556
    47 9bh5:CH (2.63) BS01 rna N/A N/A Q95Y90 39209556
    48 9bh5:CI (2.63) BS01 rna N/A N/A Q09533 39209556
    49 9bh5:CI (2.63) BS02 rna N/A N/A Q09533 39209556
    50 9bh5:CI (2.63) BS03 rna N/A N/A Q09533 39209556
    51 9bh5:CJ (2.63) BS01 rna N/A N/A Q19162 39209556
    52 9bh5:CJ (2.63) BS02 rna N/A N/A Q19162 39209556
    53 9bh5:CJ (2.63) BS03 rna N/A N/A Q19162 39209556
    54 9bh5:CL (2.63) BS01 rna N/A N/A P91128 39209556
    55 9bh5:CL (2.63) BS02 rna N/A N/A P91128 39209556
    56 9bh5:CM (2.63) BS01 rna N/A N/A Q9XVE9 39209556
    57 9bh5:CN (2.63) BS01 rna N/A N/A P91374 39209556
    58 9bh5:CN (2.63) BS02 rna N/A N/A P91374 39209556
    59 9bh5:CO (2.63) BS01 rna N/A N/A Q27389 39209556
    60 9bh5:CP (2.63) BS01 rna N/A N/A Q9BL19 39209556
    61 9bh5:CP (2.63) BS02 rna N/A N/A Q9BL19 39209556
    62 9bh5:CQ (2.63) BS01 rna N/A N/A O45946 39209556
    63 9bh5:CR (2.63) BS01 rna N/A N/A O02639 39209556
    64 9bh5:CR (2.63) BS02 rna N/A N/A O02639 39209556
    65 9bh5:CS (2.63) BS01 rna N/A N/A O44480 39209556
    66 9bh5:CS (2.63) BS02 rna N/A N/A O44480 39209556
    67 9bh5:CT (2.63) BS01 rna N/A N/A P34334 39209556
    68 9bh5:CT (2.63) BS02 rna N/A N/A P34334 39209556
    69 9bh5:CU (2.63) BS01 rna N/A N/A P52819 39209556
    70 9bh5:CV (2.63) BS01 rna N/A N/A P48158 39209556
    71 9bh5:CW (2.63) BS01 rna N/A N/A O01868 39209556
    72 9bh5:CX (2.63) BS01 rna N/A N/A Q20647 39209556
    73 9bh5:CX (2.63) BS02 rna N/A N/A Q20647 39209556
    74 9bh5:CY (2.63) BS01 rna N/A N/A Q19869 39209556
    75 9bh5:CY (2.63) BS02 rna N/A N/A Q19869 39209556
    76 9bh5:CZ (2.63) BS01 rna N/A N/A P91914 39209556
    77 9bh5:Ca (2.63) BS01 rna N/A N/A Q9BKU5 39209556
    78 9bh5:Cb (2.63) BS01 rna N/A N/A O45226 39209556
    79 9bh5:Cc (2.63) BS01 rna N/A N/A Q9XWS4 39209556
    80 9bh5:Cd (2.63) BS01 rna N/A N/A Q9U332 39209556
    81 9bh5:Ce (2.63) BS01 rna N/A N/A Q22716 39209556
    82 9bh5:Cf (2.63) BS01 rna N/A N/A P49180 39209556
    83 9bh5:Cg (2.63) BS01 rna N/A N/A A3QMC5 39209556
    84 9bh5:Ch (2.63) BS01 rna N/A N/A P34662 39209556
    85 9bh5:Ch (2.63) BS02 rna N/A N/A P34662 39209556
    86 9bh5:Ci (2.63) BS01 rna N/A N/A P49181 39209556
    87 9bh5:Cj (2.63) BS01 rna N/A N/A O62388 39209556
    88 9bh5:Cj (2.63) BS02 rna N/A N/A O62388 39209556
    89 9bh5:Ck (2.63) BS01 rna N/A N/A O17570 39209556
    90 9bh5:Cl (2.63) BS01 rna N/A N/A P52814 39209556
    91 9bh5:Cl (2.63) BS02 rna N/A N/A P52814 39209556
    92 9bh5:Cm (2.63) BS01 rna N/A N/A P49632 39209556
    93 9bh5:Co (2.63) BS01 rna N/A N/A P48166 39209556
    94 9bh5:Cp (2.63) BS01 rna N/A N/A Q9U2A8 39209556
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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