Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 100 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9bdl:AL02 (2.8) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    2 9bdl:AL02 (2.8) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    3 9bdl:AL03 (2.8) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    4 9bdl:AL04 (2.8) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    5 9bdl:AL04 (2.8) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    6 9bdl:AL05 (2.8) BS01 rna N/A GO:0000027 ... P19949 38718836
    7 9bdl:AL05 (2.8) BS02 rna N/A GO:0000027 ... P19949 38718836
    8 9bdl:AL06 (2.8) BS01 rna N/A N/A G1SKF7 38718836
    9 9bdl:AL07 (2.8) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    10 9bdl:AL07 (2.8) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    11 9bdl:AL08 (2.8) BS01 rna N/A N/A G1STW0 38718836
    12 9bdl:AL08 (2.8) BS02 rna N/A N/A G1STW0 38718836
    13 9bdl:AL09 (2.8) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    14 9bdl:AL10 (2.8) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    15 9bdl:AL10 (2.8) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    16 9bdl:AL10 (2.8) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    17 9bdl:AL11 (2.8) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    18 9bdl:AL11 (2.8) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    19 9bdl:AL11 (2.8) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    20 9bdl:AL13 (2.8) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    21 9bdl:AL13 (2.8) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    22 9bdl:AL14 (2.8) BS01 rna N/A N/A G1SZ12 38718836
    23 9bdl:AL15 (2.8) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    24 9bdl:AL15 (2.8) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    25 9bdl:AL16 (2.8) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    26 9bdl:AL17 (2.8) BS01 rna N/A N/A G1SCJ6 38718836
    27 9bdl:AL17 (2.8) BS02 rna N/A N/A G1SCJ6 38718836
    28 9bdl:AL18 (2.8) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    29 9bdl:AL19 (2.8) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    30 9bdl:AL19 (2.8) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    31 9bdl:AL20 (2.8) BS01 rna N/A N/A G1TTY7 38718836
    32 9bdl:AL20 (2.8) BS02 rna N/A N/A G1TTY7 38718836
    33 9bdl:AL21 (2.8) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    34 9bdl:AL21 (2.8) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    35 9bdl:AL22 (2.8) BS01 rna N/A N/A G1TSG1 38718836
    36 9bdl:AL23 (2.8) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    37 9bdl:AL24 (2.8) BS01 rna N/A N/A G1SE28 38718836
    38 9bdl:AL25 (2.8) BS01 rna N/A N/A G1SE76 38718836
    39 9bdl:AL25 (2.8) BS02 rna N/A N/A G1SE76 38718836
    40 9bdl:AL26 (2.8) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    41 9bdl:AL26 (2.8) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    42 9bdl:AL27 (2.8) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    43 9bdl:AL28 (2.8) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    44 9bdl:AL29 (2.8) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    45 9bdl:AL30 (2.8) BS01 rna N/A N/A G1TDL2 38718836
    46 9bdl:AL31 (2.8) BS01 rna N/A N/A G1SHG0 38718836
    47 9bdl:AL32 (2.8) BS01 rna N/A GO:0005737 ... G1TUN8 38718836
    48 9bdl:AL33 (2.8) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    49 9bdl:AL34 (2.8) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    50 9bdl:AL35 (2.8) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    51 9bdl:AL35 (2.8) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    52 9bdl:AL36 (2.8) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    53 9bdl:AL37 (2.8) BS01 rna N/A N/A U3KPD5 38718836
    54 9bdl:AL37 (2.8) BS02 rna N/A N/A U3KPD5 38718836
    55 9bdl:AL38 (2.8) BS01 rna N/A GO:0003735 ... G1U001 38718836
    56 9bdl:AL39 (2.8) BS01 rna N/A GO:0005840 ... G1TTN1 38718836
    57 9bdl:AL39 (2.8) BS02 rna N/A GO:0005840 ... G1TTN1 38718836
    58 9bdl:AL40 (2.8) BS01 rna N/A N/A P0DXC2 38718836
    59 9bdl:AL42 (2.8) BS01 rna N/A N/A A0A5F9D391 38718836
    60 9bdl:AL42 (2.8) BS02 rna N/A N/A A0A5F9D391 38718836
    61 9bdl:AL42 (2.8) BS03 rna N/A N/A A0A5F9D391 38718836
    62 9bdl:AL43 (2.8) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    63 9bdl:ALNW (2.8) BS01 rna N/A GO:0005737 ... G1U7L1 38718836
    64 9bdl:ANG (2.8) BS01 rna N/A N/A P03950 38718836
    65 9bdl:ANG (2.8) BS02 rna N/A N/A P03950 38718836
    66 9bdl:ANG (2.8) BS03 rna N/A N/A P03950 38718836
    67 9bdl:ANG (2.8) BS04 rna N/A N/A P03950 38718836
    68 9bdl:ARAC (2.8) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    69 9bdl:AS00 (2.8) BS01 rna N/A N/A G1TJH8 38718836
    70 9bdl:AS01 (2.8) BS01 rna N/A N/A G1SS70 38718836
    71 9bdl:AS02 (2.8) BS01 rna N/A N/A O18789 38718836
    72 9bdl:AS03 (2.8) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    73 9bdl:AS04 (2.8) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    74 9bdl:AS05 (2.8) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    75 9bdl:AS06 (2.8) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    76 9bdl:AS07 (2.8) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    77 9bdl:AS08 (2.8) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    78 9bdl:AS08 (2.8) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    79 9bdl:AS09 (2.8) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    80 9bdl:AS10 (2.8) BS01 rna N/A N/A G1TPV3 38718836
    81 9bdl:AS11 (2.8) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    82 9bdl:AS12 (2.8) BS01 rna N/A N/A G1SFR8 38718836
    83 9bdl:AS13 (2.8) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    84 9bdl:AS13 (2.8) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    85 9bdl:AS14 (2.8) BS01 rna N/A N/A G1T1F0 38718836
    86 9bdl:AS15 (2.8) BS01 rna N/A N/A G1U0Q2 38718836
    87 9bdl:AS16 (2.8) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    88 9bdl:AS17 (2.8) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    89 9bdl:AS18 (2.8) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    90 9bdl:AS19 (2.8) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    91 9bdl:AS20 (2.8) BS01 rna N/A N/A G1SIZ2 38718836
    92 9bdl:AS22 (2.8) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    93 9bdl:AS23 (2.8) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    94 9bdl:AS24 (2.8) BS01 rna N/A GO:0005840 ... G1T3D8 38718836
    95 9bdl:AS25 (2.8) BS01 rna N/A N/A G1TDB3 38718836
    96 9bdl:AS26 (2.8) BS01 rna N/A N/A G1TFE8 38718836
    97 9bdl:AS27 (2.8) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    98 9bdl:AS28 (2.8) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    99 9bdl:AS29 (2.8) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    100 9bdl:AS30 (2.8) BS01 rna N/A N/A G1T8A2 38718836
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218