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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wid:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    2 8wid:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    3 8wid:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    4 8wid:g (3.5) BS01 rna ? GO:0003735 ... A0R7F9 38245551
    5 8wid:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    6 8wid:h (3.5) BS02 rna ? GO:0000028 ... A0QS97 38245551
    7 8wid:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    8 8wid:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    9 8wid:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    10 8wid:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    11 8wid:l (3.5) BS02 rna ? GO:0003735 ... A0QSL6 38245551
    12 8wid:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    13 8wid:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    14 8wid:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    15 8wid:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    16 8wid:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    17 8wid:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    18 8wid:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    19 8wid:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    20 8wid:t (3.5) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    21 8wid:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    22 8wid:v (3.5) BS01 rna ? N/A A0QR10 38245551
    23 8wid:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    24 8wid:w (3.5) BS02 rna ? GO:0006417 ... A0QZ86 38245551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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