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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8v9k:1 (3.1) BS01 rna ? GO:0003735 ... A0QSD9 38355796
    2 8v9k:2 (3.1) BS01 rna ? GO:0003735 ... A0QSG7 38355796
    3 8v9k:2 (3.1) BS02 rna ? GO:0003735 ... A0QSG7 38355796
    4 8v9k:3 (3.1) BS01 rna ? GO:0003735 ... A0R215 38355796
    5 8v9k:4 (3.1) BS01 rna ? GO:0003735 ... A0R3I9 38355796
    6 8v9k:5 (3.1) BS01 rna ? GO:0003735 ... A0QS39 38355796
    7 8v9k:5 (3.1) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    8 8v9k:6 (3.1) BS01 rna ? GO:0003735 ... A0R7K0 38355796
    9 8v9k:7 (3.1) BS01 rna ? GO:0003735 ... A0QYU7 38355796
    10 8v9k:8 (3.1) BS01 rna ? GO:0003735 ... A0QSL4 38355796
    11 8v9k:C (3.1) BS01 rna ? GO:0002181 ... A0QSD4 38355796
    12 8v9k:D (3.1) BS01 rna ? GO:0003735 ... A0QSD1 38355796
    13 8v9k:E (3.1) BS01 rna ? GO:0003735 ... A0QSD2 38355796
    14 8v9k:F (3.1) BS01 rna ? GO:0000049 ... A0QSG1 38355796
    15 8v9k:F (3.1) BS02 rna ? GO:0000049 ... A0QSG1 38355796
    16 8v9k:G (3.1) BS01 rna ? GO:0002181 ... A0QSG4 38355796
    17 8v9k:H (3.1) BS01 rna ? GO:0003735 ... A0R7F6 38355796
    18 8v9k:I (3.1) BS01 rna ? GO:0003735 ... A0QS62 38355796
    19 8v9k:J (3.1) BS01 rna ? GO:0003735 ... A0QS45 38355796
    20 8v9k:K (3.1) BS01 rna ? GO:0000049 ... A0QS46 38355796
    21 8v9k:L (3.1) BS01 rna ? GO:0003729 ... A0QSP8 38355796
    22 8v9k:M (3.1) BS01 rna ? GO:0003735 ... A0QSF9 38355796
    23 8v9k:M (3.1) BS02 rna ? GO:0003735 ... A0QSF9 38355796
    24 8v9k:N (3.1) BS01 rna ? GO:0003735 ... A0QSG8 38355796
    25 8v9k:O (3.1) BS01 rna ? GO:0000049 ... A0QSD8 38355796
    26 8v9k:P (3.1) BS01 rna ? GO:0003735 ... A0QSL9 38355796
    27 8v9k:Q (3.1) BS01 rna ? GO:0003735 ... I7FGD9 38355796
    28 8v9k:Q (3.1) BS02 rna ? GO:0003735 ... I7FGD9 38355796
    29 8v9k:R (3.1) BS01 rna ? GO:0003735 ... A0QV42 38355796
    30 8v9k:R (3.1) BS02 rna ? GO:0003735 ... A0QV42 38355796
    31 8v9k:S (3.1) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    32 8v9k:T (3.1) BS01 rna ? GO:0003723 ... A0R151 38355796
    33 8v9k:U (3.1) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    34 8v9k:V (3.1) BS01 rna ? GO:0000027 ... A0QSD3 38355796
    35 8v9k:W (3.1) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    36 8v9k:X (3.1) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    37 8v9k:X (3.1) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    38 8v9k:Y (3.1) BS01 rna ? GO:0003735 ... A0R150 38355796
    39 8v9k:Z (3.1) BS01 rna ? GO:0003735 ... I7FJ52 38355796
    40 8v9k:Z (3.1) BS02 ZN ? GO:0003735 ... I7FJ52 38355796
    41 8v9k:b (3.1) BS01 rna ? GO:0003735 ... A0QVB8 38355796
    42 8v9k:c (3.1) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    43 8v9k:d (3.1) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    44 8v9k:e (3.1) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    45 8v9k:f (3.1) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    46 8v9k:f (3.1) BS02 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    47 8v9k:g (3.1) BS01 rna ? GO:0000028 ... A0QS97 38355796
    48 8v9k:h (3.1) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    49 8v9k:i (3.1) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    50 8v9k:j (3.1) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    51 8v9k:k (3.1) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    52 8v9k:l (3.1) BS01 rna ? GO:0000049 ... A0QS96 38355796
    53 8v9k:m (3.1) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    54 8v9k:n (3.1) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    55 8v9k:o (3.1) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    56 8v9k:o (3.1) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    57 8v9k:p (3.1) BS01 rna ? GO:0003735 ... A0QV37 38355796
    58 8v9k:q (3.1) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    59 8v9k:r (3.1) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    60 8v9k:s (3.1) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    61 8v9k:t (3.1) BS01 rna ? GO:0003723 ... A0R102 38355796
    62 8v9k:u (3.1) BS01 rna N/A N/A N/A 38355796
    63 8v9k:z (3.1) BS01 rna ? GO:0001666 ... P9WL63 38355796
    64 8v9k:z (3.1) BS02 rna ? GO:0001666 ... P9WL63 38355796
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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