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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8upr:0 (5.3) BS01 rna N/A N/A N/A 39117885
    2 8upr:1 (5.3) BS01 rna ? GO:0002181 ... P61175 39117885
    3 8upr:2 (5.3) BS01 rna N/A N/A N/A 39117885
    4 8upr:3 (5.3) BS01 rna N/A N/A N/A 39117885
    5 8upr:4 (5.3) BS01 rna N/A N/A N/A 39117885
    6 8upr:9 (5.3) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    7 8upr:AA (5.3) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    8 8upr:AA (5.3) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    9 8upr:AA (5.3) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    10 8upr:AB (5.3) BS01 dna ? GO:0001073 ... C3SK02 39117885
    11 8upr:AE (5.3) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    12 8upr:AE (5.3) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    13 8upr:AE (5.3) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    14 8upr:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    15 8upr:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    16 8upr:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    17 8upr:AF (5.3) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    18 8upr:C (5.3) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    19 8upr:E (5.3) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    20 8upr:F (5.3) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    21 8upr:G (5.3) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    22 8upr:I (5.3) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    23 8upr:I (5.3) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    24 8upr:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    25 8upr:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    26 8upr:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    27 8upr:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    28 8upr:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    29 8upr:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    30 8upr:N (5.3) BS01 rna N/A N/A N/A 39117885
    31 8upr:O (5.3) BS01 rna N/A N/A N/A 39117885
    32 8upr:P (5.3) BS01 rna N/A N/A N/A 39117885
    33 8upr:Q (5.3) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    34 8upr:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    35 8upr:S (5.3) BS01 rna N/A N/A N/A 39117885
    36 8upr:T (5.3) BS01 rna N/A N/A N/A 39117885
    37 8upr:T (5.3) BS02 rna N/A N/A N/A 39117885
    38 8upr:U (5.3) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    39 8upr:V (5.3) BS01 rna N/A N/A N/A 39117885
    40 8upr:W (5.3) BS01 rna N/A N/A N/A 39117885
    41 8upr:X (5.3) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    42 8upr:X (5.3) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    43 8upr:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    44 8upr:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    45 8upr:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    46 8upr:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    47 8upr:e (5.3) BS01 rna N/A N/A N/A 39117885
    48 8upr:f (5.3) BS01 rna N/A N/A N/A 39117885
    49 8upr:f (5.3) BS02 rna N/A N/A N/A 39117885
    50 8upr:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    51 8upr:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    52 8upr:i (5.3) BS01 rna N/A N/A N/A 39117885
    53 8upr:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    54 8upr:k (5.3) BS01 rna N/A N/A N/A 39117885
    55 8upr:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    56 8upr:m (5.3) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    57 8upr:n (5.3) BS01 rna N/A N/A N/A 39117885
    58 8upr:n (5.3) BS02 rna N/A N/A N/A 39117885
    59 8upr:n (5.3) BS03 rna N/A N/A N/A 39117885
    60 8upr:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    61 8upr:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    62 8upr:q (5.3) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    63 8upr:r (5.3) BS01 rna N/A N/A N/A 39117885
    64 8upr:s (5.3) BS01 rna N/A N/A N/A 39117885
    65 8upr:t (5.3) BS01 rna ? GO:0003735 ... S1NW45 39117885
    66 8upr:t (5.3) BS02 rna ? GO:0003735 ... S1NW45 39117885
    67 8upr:u (5.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    68 8upr:v (5.3) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    69 8upr:v (5.3) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    70 8upr:w (5.3) BS01 rna N/A N/A N/A 39117885
    71 8upr:x (5.3) BS01 rna N/A N/A N/A 39117885
    72 8upr:x (5.3) BS02 rna N/A N/A N/A 39117885
    73 8upr:y (5.3) BS01 rna N/A N/A N/A 39117885
    74 8upr:z (5.3) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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