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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8upp:A (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2 8upp:A (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    3 8upp:A (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    4 8upp:A (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    5 8upp:A (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    6 8upp:B (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    7 8upp:B (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    8 8upp:B (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    9 8upp:B (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    10 8upp:B (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    11 8upp:C (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    12 8upp:C (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    13 8upp:C (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    14 8upp:C (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    15 8upp:C (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    16 8upp:D (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    17 8upp:D (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    18 8upp:D (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    19 8upp:D (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    20 8upp:D (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    21 8upp:E (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    22 8upp:E (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    23 8upp:E (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    24 8upp:E (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    25 8upp:E (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    26 8upp:F (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    27 8upp:F (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    28 8upp:F (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    29 8upp:F (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    30 8upp:F (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    31 8upp:G (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    32 8upp:G (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    33 8upp:G (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    34 8upp:G (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    35 8upp:H (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    36 8upp:H (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    37 8upp:H (1.78) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    38 8upp:H (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    39 8upp:H (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    40 8upp:I (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    41 8upp:I (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    42 8upp:I (1.78) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    43 8upp:I (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    44 8upp:I (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    45 8upp:J (1.78) BS01 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    46 8upp:J (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    47 8upp:J (1.78) BS03 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    48 8upp:J (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    49 8upp:J (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    50 8upp:K (1.78) BS01 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    51 8upp:K (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    52 8upp:K (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    53 8upp:K (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    54 8upp:K (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    55 8upp:L (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    56 8upp:L (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    57 8upp:L (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    58 8upp:L (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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