Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8r8m:0 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 38826346
    2 8r8m:1 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 38826346
    3 8r8m:2 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 38826346
    4 8r8m:3 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q6 38826346
    5 8r8m:3 (2.4) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    6 8r8m:4 (2.4) BS01 rna N/A GO:0002181 ... P0A7M9 38826346
    7 8r8m:4 (2.4) BS02 ZN N/A GO:0002181 ... P0A7M9 38826346
    8 8r8m:B (2.4) BS01 rna N/A GO:0000028 ... P0A7V0 38826346
    9 8r8m:C (2.4) BS01 rna N/A GO:0000028 ... P0A7V3 38826346
    10 8r8m:D (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 38826346
    11 8r8m:E (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 38826346
    12 8r8m:F (2.4) BS01 rna N/A GO:0002181 ... P02358 38826346
    13 8r8m:G (2.4) BS01 rna N/A GO:0000028 ... P02359 38826346
    14 8r8m:H (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 38826346
    15 8r8m:I (2.4) BS01 rna N/A GO:0000049 ... P0A7X3 38826346
    16 8r8m:I (2.4) BS02 rna N/A GO:0000049 ... P0A7X3 38826346
    17 8r8m:J (2.4) BS01 rna N/A GO:0000049 ... P0A7R5 38826346
    18 8r8m:K (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 38826346
    19 8r8m:L (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 38826346
    20 8r8m:M (2.4) BS01 rna N/A GO:0000049 ... P0A7S9 38826346
    21 8r8m:N (2.4) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    22 8r8m:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    23 8r8m:O (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    24 8r8m:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    25 8r8m:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    26 8r8m:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    27 8r8m:S (2.4) BS01 rna N/A GO:0000028 ... P0A7U3 38826346
    28 8r8m:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    29 8r8m:U (2.4) BS01 rna N/A GO:0000028 ... P68679 38826346
    30 8r8m:c (2.4) BS01 rna N/A GO:0000027 ... P60422 38826346
    31 8r8m:c (2.4) BS02 rna N/A GO:0000027 ... P60422 38826346
    32 8r8m:d (2.4) BS01 rna N/A GO:0000027 ... P60438 38826346
    33 8r8m:e (2.4) BS01 rna N/A GO:0001070 ... P60723 38826346
    34 8r8m:f (2.4) BS01 rna N/A GO:0000027 ... P62399 38826346
    35 8r8m:f (2.4) BS02 rna N/A GO:0000027 ... P62399 38826346
    36 8r8m:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    37 8r8m:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    38 8r8m:i (2.4) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    39 8r8m:j (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    40 8r8m:j (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    41 8r8m:k (2.4) BS01 rna N/A GO:0002181 ... P02413 38826346
    42 8r8m:l (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    43 8r8m:l (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    44 8r8m:m (2.4) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    45 8r8m:n (2.4) BS01 rna N/A GO:0002181 ... P0C018 38826346
    46 8r8m:n (2.4) BS02 rna N/A GO:0002181 ... P0C018 38826346
    47 8r8m:o (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    48 8r8m:o (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    49 8r8m:p (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    50 8r8m:q (2.4) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    51 8r8m:r (2.4) BS01 rna N/A GO:0002181 ... P61175 38826346
    52 8r8m:s (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    53 8r8m:t (2.4) BS01 rna N/A GO:0000027 ... P60624 38826346
    54 8r8m:u (2.4) BS01 rna N/A GO:0000027 ... P68919 38826346
    55 8r8m:v (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    56 8r8m:v (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    57 8r8m:w (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    58 8r8m:x (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    59 8r8m:y (2.4) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    60 8r8m:y (2.4) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    61 8r8m:z (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218