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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8pj2:1 (3.4) BS01 rna N/A N/A P55884 N/A
    2 8pj2:B (3.4) BS01 rna N/A N/A P62280 N/A
    3 8pj2:C (3.4) BS01 rna N/A N/A P62701 N/A
    4 8pj2:D (3.4) BS01 rna N/A N/A P46781 N/A
    5 8pj2:E (3.4) BS01 rna N/A N/A P62266 N/A
    6 8pj2:F (3.4) BS01 rna N/A N/A P62861 N/A
    7 8pj2:G (3.4) BS01 rna N/A N/A P62081 N/A
    8 8pj2:H (3.4) BS01 rna N/A N/A P42677 N/A
    9 8pj2:I (3.4) BS01 rna N/A N/A P62277 N/A
    10 8pj2:J (3.4) BS01 rna N/A N/A P62244 N/A
    11 8pj2:L (3.4) BS01 rna N/A N/A P15880 N/A
    12 8pj2:M (3.4) BS01 rna N/A N/A P08708 N/A
    13 8pj2:N (3.4) BS01 rna N/A N/A P08865 N/A
    14 8pj2:O (3.4) BS01 rna N/A N/A P61247 N/A
    15 8pj2:P (3.4) BS01 rna N/A N/A P62263 N/A
    16 8pj2:Q (3.4) BS01 rna N/A N/A P62854 N/A
    17 8pj2:Q (3.4) BS02 ZN N/A N/A P62854 N/A
    18 8pj2:R (3.4) BS01 rna N/A N/A P62241 N/A
    19 8pj2:S (3.4) BS01 rna N/A N/A P62753 N/A
    20 8pj2:T (3.4) BS01 rna N/A N/A P62847 N/A
    21 8pj2:V (3.4) BS01 rna N/A N/A P46782 N/A
    22 8pj2:V (3.4) BS02 MG N/A N/A P46782 N/A
    23 8pj2:Y (3.4) BS01 rna N/A N/A P62249 N/A
    24 8pj2:Z (3.4) BS01 rna N/A N/A P23396 N/A
    25 8pj2:Z (3.4) BS02 rna N/A N/A P23396 N/A
    26 8pj2:a (3.4) BS01 rna N/A N/A P46783 N/A
    27 8pj2:b (3.4) BS01 rna N/A N/A P62841 N/A
    28 8pj2:b (3.4) BS02 rna N/A N/A P62841 N/A
    29 8pj2:b (3.4) BS03 rna N/A N/A P62841 N/A
    30 8pj2:c (3.4) BS01 rna N/A N/A P63244 N/A
    31 8pj2:d (3.4) BS01 rna N/A N/A P39019 N/A
    32 8pj2:e (3.4) BS01 rna N/A N/A P62851 N/A
    33 8pj2:e (3.4) BS02 rna N/A N/A P62851 N/A
    34 8pj2:f (3.4) BS01 rna N/A N/A P62269 N/A
    35 8pj2:f (3.4) BS02 rna N/A N/A P62269 N/A
    36 8pj2:f (3.4) BS03 MG N/A N/A P62269 N/A
    37 8pj2:h (3.4) BS01 rna N/A N/A P60866 N/A
    38 8pj2:i (3.4) BS01 rna N/A N/A P62273 N/A
    39 8pj2:i (3.4) BS02 MG N/A N/A P62273 N/A
    40 8pj2:i (3.4) BS03 MG N/A N/A P62273 N/A
    41 8pj2:k (3.4) BS01 rna N/A N/A P62979 N/A
    42 8pj2:k (3.4) BS02 ZN N/A N/A P62979 N/A
    43 8pj2:m (3.4) BS01 rna N/A N/A P25398 N/A
    44 8pj2:n (3.4) BS01 rna N/A N/A P62857 N/A
    45 8pj2:o (3.4) BS01 rna N/A N/A O75821 N/A
    46 8pj2:q (3.4) BS01 rna N/A N/A P47813 N/A
    47 8pj2:q (3.4) BS02 rna N/A N/A P47813 N/A
    48 8pj2:q (3.4) BS03 rna N/A N/A P47813 N/A
    49 8pj2:r (3.4) BS01 rna N/A N/A P05198 N/A
    50 8pj2:r (3.4) BS02 rna N/A N/A P05198 N/A
    51 8pj2:t (3.4) BS01 rna N/A N/A P41091 N/A
    52 8pj2:u (3.4) BS01 rna N/A N/A Q14152 N/A
    53 8pj2:x (3.4) BS01 rna N/A N/A O15371 N/A
    54 8pj2:y (3.4) BS01 rna N/A N/A Q99613 N/A
    55 8pj2:y (3.4) BS02 rna N/A N/A Q99613 N/A
    56 8pj2:z (3.4) BS01 rna N/A N/A P55010 N/A
    57 8pj2:z (3.4) BS02 rna N/A N/A P55010 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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