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BioLiP
Download all results in tab-seperated text for 86 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8p5d:LA0 (10.8) BS01 rna ? GO:0002181 ... S7W736 37709902
    2 8p5d:LA0 (10.8) BS02 rna ? GO:0002181 ... S7W736 37709902
    3 8p5d:LAA (10.8) BS01 rna N/A GO:0003735 ... N/A 37709902
    4 8p5d:LB0 (10.8) BS01 rna ? GO:0003723 ... S7XFB1 37709902
    5 8p5d:LC0 (10.8) BS01 rna ? GO:0003723 ... S7WCM8 37709902
    6 8p5d:LCC (10.8) BS01 rna ? GO:0003723 ... S7WAY0 37709902
    7 8p5d:LD0 (10.8) BS01 rna ? GO:0000027 ... S7XIG7 37709902
    8 8p5d:LD0 (10.8) BS02 rna ? GO:0000027 ... S7XIG7 37709902
    9 8p5d:LDD (10.8) BS01 rna ? GO:0002181 ... S7XW48 37709902
    10 8p5d:LE0 (10.8) BS01 rna ? GO:0000027 ... S7W5S3 37709902
    11 8p5d:LEE (10.8) BS01 rna ? GO:0003735 ... S7XKE0 37709902
    12 8p5d:LF0 (10.8) BS01 rna ? GO:0000463 ... S7W946 37709902
    13 8p5d:LF0 (10.8) BS02 rna ? GO:0000463 ... S7W946 37709902
    14 8p5d:LFF (10.8) BS01 rna ? GO:0002181 ... S7W662 37709902
    15 8p5d:LG0 (10.8) BS01 rna ? GO:0000470 ... S7XU63 37709902
    16 8p5d:LGG (10.8) BS01 rna ? GO:0003735 ... S7W7C6 37709902
    17 8p5d:LGG (10.8) BS02 ZN ? GO:0003735 ... S7W7C6 37709902
    18 8p5d:LH0 (10.8) BS01 rna ? GO:0002181 ... S7XRZ9 37709902
    19 8p5d:LHH (10.8) BS01 rna ? GO:0003735 ... S7W7Y2 37709902
    20 8p5d:LI0 (10.8) BS01 rna ? GO:0000027 ... S7WBF8 37709902
    21 8p5d:LI0 (10.8) BS02 rna ? GO:0000027 ... S7WBF8 37709902
    22 8p5d:LII (10.8) BS01 rna ? GO:0002181 ... S7WED1 37709902
    23 8p5d:LJ0 (10.8) BS01 rna ? GO:0003723 ... S7WB69 37709902
    24 8p5d:LJ0 (10.8) BS02 rna ? GO:0003723 ... S7WB69 37709902
    25 8p5d:LJJ (10.8) BS01 rna N/A GO:0003735 ... N/A 37709902
    26 8p5d:LJJ (10.8) BS02 ZN N/A GO:0003735 ... N/A 37709902
    27 8p5d:LL0 (10.8) BS01 rna ? GO:0003723 ... S7XVM9 37709902
    28 8p5d:LLL (10.8) BS01 rna ? GO:0003735 ... S7XTP1 37709902
    29 8p5d:LM0 (10.8) BS01 rna ? N/A S7XVN9 37709902
    30 8p5d:LMM (10.8) BS01 rna ? GO:0003735 ... S7XSQ3 37709902
    31 8p5d:LMM (10.8) BS02 ZN ? GO:0003735 ... S7XSQ3 37709902
    32 8p5d:LN0 (10.8) BS01 rna ? GO:0002181 ... S7W7A2 37709902
    33 8p5d:LO0 (10.8) BS01 rna ? GO:0003729 ... S7XUD8 37709902
    34 8p5d:LOO (10.8) BS01 rna ? GO:0003735 ... S7XL20 37709902
    35 8p5d:LOO (10.8) BS02 ZN ? GO:0003735 ... S7XL20 37709902
    36 8p5d:LP0 (10.8) BS01 rna ? GO:0002181 ... S7WDR4 37709902
    37 8p5d:LPP (10.8) BS01 rna ? GO:0003735 ... S7W6N9 37709902
    38 8p5d:LPP (10.8) BS02 ZN ? GO:0003735 ... S7W6N9 37709902
    39 8p5d:LQ0 (10.8) BS01 rna ? GO:0003723 ... S7WAI2 37709902
    40 8p5d:LR0 (10.8) BS01 rna ? GO:0003723 ... S7WBY9 37709902
    41 8p5d:LS0 (10.8) BS01 rna ? GO:0003735 ... S7WAG4 37709902
    42 8p5d:LS0 (10.8) BS02 rna ? GO:0003735 ... S7WAG4 37709902
    43 8p5d:LT0 (10.8) BS01 rna ? GO:0003735 ... S7W8F6 37709902
    44 8p5d:LT0 (10.8) BS02 rna ? GO:0003735 ... S7W8F6 37709902
    45 8p5d:LU0 (10.8) BS01 rna ? GO:0002181 ... S7W958 37709902
    46 8p5d:LV0 (10.8) BS01 rna ? GO:0003735 ... S7XLC4 37709902
    47 8p5d:LV0 (10.8) BS02 rna ? GO:0003735 ... S7XLC4 37709902
    48 8p5d:LW0 (10.8) BS01 rna ? GO:0005840 ... S7XSY2 37709902
    49 8p5d:LW0 (10.8) BS02 rna ? GO:0005840 ... S7XSY2 37709902
    50 8p5d:LX0 (10.8) BS01 rna ? GO:0000027 ... S7XFW8 37709902
    51 8p5d:LY0 (10.8) BS01 rna ? GO:0002181 ... S7W884 37709902
    52 8p5d:LZ0 (10.8) BS01 rna ? GO:0003735 ... S7XU08 37709902
    53 8p5d:MD1 (10.8) BS01 rna ? N/A S7W5K5 37709902
    54 8p5d:SA0 (10.8) BS01 rna ? GO:0000028 ... S7W8R1 37709902
    55 8p5d:SAA (10.8) BS01 rna ? GO:0003729 ... S7W9M7 37709902
    56 8p5d:SAA (10.8) BS02 ZN ? GO:0003729 ... S7W9M7 37709902
    57 8p5d:SB0 (10.8) BS01 rna N/A GO:0003735 ... N/A 37709902
    58 8p5d:SBB (10.8) BS01 rna N/A GO:0003735 ... N/A 37709902
    59 8p5d:SBB (10.8) BS02 ZN N/A GO:0003735 ... N/A 37709902
    60 8p5d:SC0 (10.8) BS01 rna ? GO:0003723 ... S7W7R5 37709902
    61 8p5d:SD0 (10.8) BS01 rna ? GO:0003723 ... S7WAW0 37709902
    62 8p5d:SDD (10.8) BS01 rna ? GO:0003735 ... S7XJB1 37709902
    63 8p5d:SDD (10.8) BS02 ZN ? GO:0003735 ... S7XJB1 37709902
    64 8p5d:SE0 (10.8) BS01 rna ? GO:0003723 ... S7XG51 37709902
    65 8p5d:SEE (10.8) BS01 rna N/A GO:0003735 ... N/A 37709902
    66 8p5d:SF0 (10.8) BS01 rna ? GO:0000028 ... S7W4M9 37709902
    67 8p5d:SFF (10.8) BS01 rna ? GO:0003735 ... S7W9X5 37709902
    68 8p5d:SG0 (10.8) BS01 rna ? GO:0003735 ... S7WDE5 37709902
    69 8p5d:SGG (10.8) BS01 rna ? GO:0001934 ... S7XVG3 37709902
    70 8p5d:SH0 (10.8) BS01 rna ? GO:0003735 ... S7XV29 37709902
    71 8p5d:SI0 (10.8) BS01 rna ? GO:0000462 ... S7XGW2 37709902
    72 8p5d:SJ0 (10.8) BS01 rna ? GO:0003723 ... S7W8E3 37709902
    73 8p5d:SK0 (10.8) BS01 rna ? GO:0003723 ... S7XU48 37709902
    74 8p5d:SL0 (10.8) BS01 rna ? GO:0003735 ... S7W8R0 37709902
    75 8p5d:SM0 (10.8) BS01 rna ? GO:0003735 ... S7W7D2 37709902
    76 8p5d:SN0 (10.8) BS01 rna ? GO:0003735 ... S7XVZ9 37709902
    77 8p5d:SO0 (10.8) BS01 rna ? GO:0000028 ... S7W6I0 37709902
    78 8p5d:SP0 (10.8) BS01 rna ? GO:0000028 ... S7XKY9 37709902
    79 8p5d:SQ0 (10.8) BS01 rna ? GO:0000462 ... S7WDU9 37709902
    80 8p5d:SR0 (10.8) BS01 rna N/A GO:0003735 ... N/A 37709902
    81 8p5d:SS0 (10.8) BS01 rna ? GO:0003676 ... S7XJA1 37709902
    82 8p5d:ST0 (10.8) BS01 rna ? GO:0000028 ... S7W7P5 37709902
    83 8p5d:SU0 (10.8) BS01 rna ? GO:0005840 ... S7W986 37709902
    84 8p5d:SW0 (10.8) BS01 rna ? GO:0003735 ... S7XK92 37709902
    85 8p5d:SX0 (10.8) BS01 rna N/A GO:0003735 ... N/A 37709902
    86 8p5d:SY0 (10.8) BS01 rna ? GO:0003735 ... S7W8J5 37709902
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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