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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ois:AB (3.0) BS01 peptide ? GO:0003723 ... P82673 37141370
    2 8ois:AC (3.0) BS01 rna ? GO:0003723 ... Q96EL2 37141370
    3 8ois:AD (3.0) BS01 rna ? GO:0005515 ... Q9NWT8 37141370
    4 8ois:AE (3.0) BS01 rna ? GO:0003735 ... P82932 37141370
    5 8ois:AF (3.0) BS01 rna ? GO:0000028 ... Q9Y2R9 37141370
    6 8ois:AH (3.0) BS01 peptide ? GO:0003674 ... P82664 37141370
    7 8ois:AH (3.0) BS02 rna ? GO:0003674 ... P82664 37141370
    8 8ois:AJ (3.0) BS01 rna ? GO:0003723 ... O15235 37141370
    9 8ois:AK (3.0) BS01 rna ? GO:0003723 ... O60783 37141370
    10 8ois:AL (3.0) BS01 rna ? GO:0003723 ... P82914 37141370
    11 8ois:AM (3.0) BS01 rna ? GO:0003735 ... Q9Y3D3 37141370
    12 8ois:AM (3.0) BS02 FS2 ? GO:0003735 ... Q9Y3D3 37141370
    13 8ois:AN (3.0) BS01 rna ? GO:0003735 ... Q9Y2R5 37141370
    14 8ois:AO (3.0) BS01 rna ? GO:0003735 ... Q9Y676 37141370
    15 8ois:AO (3.0) BS02 ZN ? GO:0003735 ... Q9Y676 37141370
    16 8ois:AP (3.0) BS01 rna ? GO:0003735 ... Q9Y3D5 37141370
    17 8ois:AP (3.0) BS02 FS2 ? GO:0003735 ... Q9Y3D5 37141370
    18 8ois:AQ (3.0) BS01 rna ? GO:0003723 ... P82921 37141370
    19 8ois:AS (3.0) BS01 rna ? GO:0003723 ... Q9Y3D9 37141370
    20 8ois:AT (3.0) BS01 rna ? GO:0003735 ... P82663 37141370
    21 8ois:AT (3.0) BS02 FS2 ? GO:0003735 ... P82663 37141370
    22 8ois:AU (3.0) BS01 rna ? GO:0003723 ... Q9BYN8 37141370
    23 8ois:AV (3.0) BS01 peptide ? GO:0000049 ... Q92552 37141370
    24 8ois:AV (3.0) BS02 rna ? GO:0000049 ... Q92552 37141370
    25 8ois:AX (3.0) BS01 rna ? GO:0003723 ... P51398 37141370
    26 8ois:AX (3.0) BS02 ATP ? GO:0003723 ... P51398 37141370
    27 8ois:AX (3.0) BS03 GDP ? GO:0003723 ... P51398 37141370
    28 8ois:AY (3.0) BS01 peptide ? GO:0003723 ... Q92665 37141370
    29 8ois:AZ (3.0) BS01 peptide ? GO:0003735 ... Q9Y291 37141370
    30 8ois:AZ (3.0) BS02 rna ? GO:0003735 ... Q9Y291 37141370
    31 8ois:Aa (3.0) BS01 rna ? GO:0003747 ... O75570 37141370
    32 8ois:Aa (3.0) BS02 rna ? GO:0003747 ... O75570 37141370
    33 8ois:Aa (3.0) BS03 rna ? GO:0003747 ... O75570 37141370
    34 8ois:Ab (3.0) BS01 rna ? GO:0003735 ... Q9Y399 37141370
    35 8ois:Ab (3.0) BS02 MG ? GO:0003735 ... Q9Y399 37141370
    36 8ois:Ac (3.0) BS01 rna ? GO:0001650 ... Q96BP2 37141370
    37 8ois:Ad (3.0) BS01 rna ? GO:0003723 ... P82675 37141370
    38 8ois:Ad (3.0) BS02 MG ? GO:0003723 ... P82675 37141370
    39 8ois:Ae (3.0) BS01 rna ? GO:0003723 ... Q96EY7 37141370
    40 8ois:Ag (3.0) BS01 rna ? GO:0003723 ... P82933 37141370
    41 8ois:Ai (3.0) BS01 rna ? GO:0003723 ... P82912 37141370
    42 8ois:Aj (3.0) BS01 rna ? GO:0003735 ... P82930 37141370
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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