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BioLiP
Download all results in tab-seperated text for 101 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8oin:AB (3.6) BS01 rna ? GO:0003735 ... F1SG95 37141370
    2 8oin:AC (3.6) BS01 rna ? GO:0005739 ... A0A287ANU4 37141370
    3 8oin:AD (3.6) BS01 rna ? GO:0005739 ... A0A8D1P8R7 37141370
    4 8oin:AD (3.6) BS02 rna ? GO:0005739 ... A0A8D1P8R7 37141370
    5 8oin:AE (3.6) BS01 rna ? GO:0003735 ... A0A5K1V0G5 37141370
    6 8oin:AF (3.6) BS01 rna ? GO:0000028 ... A0A286ZJ25 37141370
    7 8oin:AH (3.6) BS01 rna ? GO:0005739 ... F1RUU2 37141370
    8 8oin:AJ (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL52 37141370
    9 8oin:AK (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL53 37141370
    10 8oin:AL (3.6) BS01 rna ? GO:0003735 ... A0A287AKS1 37141370
    11 8oin:AM (3.6) BS01 rna ? GO:0003735 ... A0A480JTD7 37141370
    12 8oin:AN (3.6) BS01 rna ? GO:0003735 ... A0A8D1IXU1 37141370
    13 8oin:AO (3.6) BS01 rna ? GO:0003735 ... Q767K8 37141370
    14 8oin:AO (3.6) BS02 ZN ? GO:0003735 ... Q767K8 37141370
    15 8oin:AP (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL54 37141370
    16 8oin:AP (3.6) BS02 FES ? GO:0003735 ... A0A0M3KL54 37141370
    17 8oin:AQ (3.6) BS01 rna ? GO:0003735 ... A0A286ZNB3 37141370
    18 8oin:AS (3.6) BS01 rna ? GO:0003735 ... A0A287AEW3 37141370
    19 8oin:AT (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL55 37141370
    20 8oin:AT (3.6) BS02 FES ? GO:0003735 ... A0A0M3KL55 37141370
    21 8oin:AU (3.6) BS01 rna ? GO:0005763 ... A0A287AY01 37141370
    22 8oin:AV (3.6) BS01 rna ? N/A A0A5G2R1I0 37141370
    23 8oin:AX (3.6) BS01 rna ? GO:0005654 ... A0A8D1XNL0 37141370
    24 8oin:AX (3.6) BS02 ATP ? GO:0005654 ... A0A8D1XNL0 37141370
    25 8oin:AX (3.6) BS03 GDP ? GO:0005654 ... A0A8D1XNL0 37141370
    26 8oin:AZ (3.6) BS01 rna ? GO:0005739 ... A0A4X1V2H3 37141370
    27 8oin:Aa (3.6) BS01 rna ? GO:0003747 ... O75570 37141370
    28 8oin:Aa (3.6) BS02 rna ? GO:0003747 ... O75570 37141370
    29 8oin:Aa (3.6) BS03 rna ? GO:0003747 ... O75570 37141370
    30 8oin:Aa (3.6) BS04 rna ? GO:0003747 ... O75570 37141370
    31 8oin:Ab (3.6) BS01 rna ? GO:0003735 ... F1S001 37141370
    32 8oin:Ab (3.6) BS02 MG ? GO:0003735 ... F1S001 37141370
    33 8oin:Ac (3.6) BS01 rna ? GO:0005739 ... A0A4X1SZV4 37141370
    34 8oin:Ad (3.6) BS01 rna ? GO:0003723 ... F1SU66 37141370
    35 8oin:Ad (3.6) BS02 rna ? GO:0003723 ... F1SU66 37141370
    36 8oin:Ag (3.6) BS01 rna ? GO:0003723 ... I3LU08 37141370
    37 8oin:Ag (3.6) BS02 rna ? GO:0003723 ... I3LU08 37141370
    38 8oin:Ai (3.6) BS01 rna ? GO:0003735 ... A0A286ZJJ6 37141370
    39 8oin:Aj (3.6) BS01 rna ? GO:0003735 ... A0A287AVS9 37141370
    40 8oin:B1 (3.6) BS01 peptide ? GO:0003735 ... A0A8D0VGD9 37141370
    41 8oin:B1 (3.6) BS02 peptide ? GO:0003735 ... A0A8D0VGD9 37141370
    42 8oin:BA (3.6) BS01 rna ? GO:0003735 ... A0A4X1TXR4 37141370
    43 8oin:BB (3.6) BS01 rna ? GO:0003735 ... A0A480JJI1 37141370
    44 8oin:BC (3.6) BS01 rna ? GO:0003723 ... F1RHJ1 37141370
    45 8oin:BD (3.6) BS01 rna ? GO:0003735 ... A0A4X1U0F6 37141370
    46 8oin:BE (3.6) BS01 rna ? GO:0003735 ... A0A286ZTW8 37141370
    47 8oin:BF (3.6) BS01 rna ? GO:0003735 ... F1SGC7 37141370
    48 8oin:BG (3.6) BS01 rna ? GO:0003735 ... A0A8D0VJF4 37141370
    49 8oin:BH (3.6) BS01 rna ? GO:0003735 ... I3LTC4 37141370
    50 8oin:BH (3.6) BS02 ZN ? GO:0003735 ... I3LTC4 37141370
    51 8oin:BI (3.6) BS01 rna ? GO:0003735 ... A0A4X1TLP9 37141370
    52 8oin:BJ (3.6) BS01 rna ? GO:0003735 ... A0A8D1JE64 37141370
    53 8oin:BK (3.6) BS01 rna ? GO:0003735 ... A0A5G2QZK0 37141370
    54 8oin:BL (3.6) BS01 rna ? GO:0003723 ... A0A287A143 37141370
    55 8oin:BM (3.6) BS01 rna ? GO:0003735 ... A0A140UHW4 37141370
    56 8oin:BN (3.6) BS01 rna ? GO:0003735 ... A0A287B9C4 37141370
    57 8oin:BO (3.6) BS01 rna ? GO:0003735 ... I3LR45 37141370
    58 8oin:BP (3.6) BS01 peptide ? GO:0005840 ... F1RWJ0 37141370
    59 8oin:BP (3.6) BS02 peptide ? GO:0005840 ... F1RWJ0 37141370
    60 8oin:BP (3.6) BS03 peptide ? GO:0005840 ... F1RWJ0 37141370
    61 8oin:BP (3.6) BS04 peptide ? GO:0005840 ... F1RWJ0 37141370
    62 8oin:BP (3.6) BS05 rna ? GO:0005840 ... F1RWJ0 37141370
    63 8oin:BP (3.6) BS06 FES ? GO:0005840 ... F1RWJ0 37141370
    64 8oin:BQ (3.6) BS01 rna ? GO:0003735 ... F1RU54 37141370
    65 8oin:BR (3.6) BS01 rna ? GO:0003729 ... K7GP19 37141370
    66 8oin:BS (3.6) BS01 rna ? GO:0003735 ... A0A287BMZ6 37141370
    67 8oin:BT (3.6) BS01 rna ? GO:0003735 ... A0A8D0HMG9 37141370
    68 8oin:BU (3.6) BS01 rna ? GO:0003735 ... F1RI89 37141370
    69 8oin:BV (3.6) BS01 rna ? GO:0003735 ... F1RMQ4 37141370
    70 8oin:BW (3.6) BS01 rna ? GO:0003735 ... A0A4X1VX01 37141370
    71 8oin:BW (3.6) BS02 rna ? GO:0003735 ... A0A4X1VX01 37141370
    72 8oin:BX (3.6) BS01 rna ? GO:0003735 ... I3LNJ0 37141370
    73 8oin:BY (3.6) BS01 rna ? GO:0003735 ... A0A286ZU56 37141370
    74 8oin:BZ (3.6) BS01 rna ? GO:0003723 ... F1RY70 37141370
    75 8oin:Ba (3.6) BS01 rna ? GO:0003735 ... F1S9B7 37141370
    76 8oin:Bc (3.6) BS01 rna ? N/A I3LN63 37141370
    77 8oin:Be (3.6) BS01 rna ? GO:0003735 ... A0A287BP93 37141370
    78 8oin:Bg (3.6) BS01 rna ? GO:0005634 ... A0A286ZXA6 37141370
    79 8oin:Bh (3.6) BS01 rna ? GO:0003735 ... F1RRH6 37141370
    80 8oin:Bh (3.6) BS02 FES ? GO:0003735 ... F1RRH6 37141370
    81 8oin:Bi (3.6) BS01 rna ? GO:0003735 ... A0A480QIM3 37141370
    82 8oin:Bj (3.6) BS01 rna ? GO:0003723 ... A0A287AF82 37141370
    83 8oin:Bl (3.6) BS01 rna ? GO:0003735 ... A0A287A731 37141370
    84 8oin:Bl (3.6) BS02 ZN ? GO:0003735 ... A0A287A731 37141370
    85 8oin:Bm (3.6) BS01 rna ? GO:0003735 ... A0A287BIV6 37141370
    86 8oin:Bn (3.6) BS01 rna ? GO:0005739 ... F1RW03 37141370
    87 8oin:Bn (3.6) BS02 rna ? GO:0005739 ... F1RW03 37141370
    88 8oin:Bp (3.6) BS01 rna ? GO:0005739 ... A0A286ZP98 37141370
    89 8oin:Bp (3.6) BS02 rna ? GO:0005739 ... A0A286ZP98 37141370
    90 8oin:Bq (3.6) BS01 rna ? GO:0003735 ... A0A8D1BPA5 37141370
    91 8oin:Bq (3.6) BS02 MG ? GO:0003735 ... A0A8D1BPA5 37141370
    92 8oin:Br (3.6) BS01 rna ? GO:0005739 ... A0A287BQA1 37141370
    93 8oin:Bs (3.6) BS01 rna ? GO:0003735 ... F1S8U4 37141370
    94 8oin:Bt (3.6) BS01 rna ? GO:0003723 ... F1SR64 37141370
    95 8oin:Bu (3.6) BS01 rna ? GO:0005739 ... I3LGM5 37141370
    96 8oin:Bv (3.6) BS01 rna ? GO:0003735 ... F1SRT0 37141370
    97 8oin:Bv (3.6) BS02 PHE ? GO:0003735 ... F1SRT0 37141370
    98 8oin:Bw (3.6) BS01 rna ? GO:0005739 ... A0A480J9Z6 37141370
    99 8oin:Bw (3.6) BS02 rna ? GO:0005739 ... A0A480J9Z6 37141370
    100 8oin:Bx (3.6) BS01 rna ? GO:0003735 ... A0A0R4J8D6 37141370
    101 8oin:Bz (3.6) BS01 rna ? GO:0003735 ... A0A8D1VKN8 37141370
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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