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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jp3:A (2.73) BS01 A86 ? GO:0009416 ... B8BS67 39030906
    2 8jp3:A (2.73) BS02 A86 ? GO:0009416 ... B8BS67 39030906
    3 8jp3:A (2.73) BS03 A86 ? GO:0009416 ... B8BS67 39030906
    4 8jp3:A (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    5 8jp3:A (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    6 8jp3:A (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    7 8jp3:A (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    8 8jp3:A (2.73) BS08 CLA ? GO:0009416 ... B8BS67 39030906
    9 8jp3:A (2.73) BS09 CLA ? GO:0009416 ... B8BS67 39030906
    10 8jp3:A (2.73) BS10 KC2 ? GO:0009416 ... B8BS67 39030906
    11 8jp3:A (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    12 8jp3:A (2.73) BS12 KC2 ? GO:0009416 ... B8BS67 39030906
    13 8jp3:A (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    14 8jp3:A (2.73) BS14 CLA ? GO:0009416 ... B8BS67 39030906
    15 8jp3:A (2.73) BS15 KC1 ? GO:0009416 ... B8BS67 39030906
    16 8jp3:A (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    17 8jp3:A (2.73) BS17 CLA ? GO:0009416 ... B8BS67 39030906
    18 8jp3:A (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    19 8jp3:A (2.73) BS19 A86 ? GO:0009416 ... B8BS67 39030906
    20 8jp3:A (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    21 8jp3:B (2.73) BS01 A86 ? GO:0009416 ... B8BS67 39030906
    22 8jp3:B (2.73) BS02 CLA ? GO:0009416 ... B8BS67 39030906
    23 8jp3:B (2.73) BS03 A86 ? GO:0009416 ... B8BS67 39030906
    24 8jp3:B (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    25 8jp3:B (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    26 8jp3:B (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    27 8jp3:B (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    28 8jp3:B (2.73) BS08 A86 ? GO:0009416 ... B8BS67 39030906
    29 8jp3:B (2.73) BS09 A86 ? GO:0009416 ... B8BS67 39030906
    30 8jp3:B (2.73) BS10 CLA ? GO:0009416 ... B8BS67 39030906
    31 8jp3:B (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    32 8jp3:B (2.73) BS12 KC2 ? GO:0009416 ... B8BS67 39030906
    33 8jp3:B (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    34 8jp3:B (2.73) BS14 KC2 ? GO:0009416 ... B8BS67 39030906
    35 8jp3:B (2.73) BS15 CLA ? GO:0009416 ... B8BS67 39030906
    36 8jp3:B (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    37 8jp3:B (2.73) BS17 KC1 ? GO:0009416 ... B8BS67 39030906
    38 8jp3:B (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    39 8jp3:B (2.73) BS19 CLA ? GO:0009416 ... B8BS67 39030906
    40 8jp3:B (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    41 8jp3:C (2.73) BS01 A86 ? GO:0009416 ... B8BS67 39030906
    42 8jp3:C (2.73) BS02 CLA ? GO:0009416 ... B8BS67 39030906
    43 8jp3:C (2.73) BS03 A86 ? GO:0009416 ... B8BS67 39030906
    44 8jp3:C (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    45 8jp3:C (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    46 8jp3:C (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    47 8jp3:C (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    48 8jp3:C (2.73) BS08 A86 ? GO:0009416 ... B8BS67 39030906
    49 8jp3:C (2.73) BS09 A86 ? GO:0009416 ... B8BS67 39030906
    50 8jp3:C (2.73) BS10 CLA ? GO:0009416 ... B8BS67 39030906
    51 8jp3:C (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    52 8jp3:C (2.73) BS12 KC2 ? GO:0009416 ... B8BS67 39030906
    53 8jp3:C (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    54 8jp3:C (2.73) BS14 KC2 ? GO:0009416 ... B8BS67 39030906
    55 8jp3:C (2.73) BS15 CLA ? GO:0009416 ... B8BS67 39030906
    56 8jp3:C (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    57 8jp3:C (2.73) BS17 KC1 ? GO:0009416 ... B8BS67 39030906
    58 8jp3:C (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    59 8jp3:C (2.73) BS19 CLA ? GO:0009416 ... B8BS67 39030906
    60 8jp3:C (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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