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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ibd:AA (4.2) BS01 peptide N/A N/A Q9CZ13 N/A
    2 8ibd:AB (4.2) BS01 peptide N/A N/A Q9DB77 N/A
    3 8ibd:AC (4.2) BS01 HEM N/A N/A P00158 N/A
    4 8ibd:AC (4.2) BS02 HEM N/A N/A P00158 N/A
    5 8ibd:AC (4.2) BS03 UQ6 N/A N/A P00158 N/A
    6 8ibd:AD (4.2) BS01 peptide N/A N/A Q9D0M3 N/A
    7 8ibd:AD (4.2) BS02 HEC N/A N/A Q9D0M3 N/A
    8 8ibd:AE (4.2) BS01 peptide N/A N/A Q9CR68 N/A
    9 8ibd:AE (4.2) BS02 peptide N/A N/A Q9CR68 N/A
    10 8ibd:Aa (4.2) BS01 peptide N/A N/A Q9CZ13 N/A
    11 8ibd:Ab (4.2) BS01 peptide N/A N/A Q9DB77 N/A
    12 8ibd:Ac (4.2) BS01 HEM N/A N/A P00158 N/A
    13 8ibd:Ac (4.2) BS02 HEM N/A N/A P00158 N/A
    14 8ibd:Ac (4.2) BS03 U10 N/A N/A P00158 N/A
    15 8ibd:Ac (4.2) BS04 UQ6 N/A N/A P00158 N/A
    16 8ibd:Ad (4.2) BS01 HEC N/A N/A Q9D0M3 N/A
    17 8ibd:B (4.2) BS01 SF4 N/A N/A Q9DC70 N/A
    18 8ibd:B (4.2) BS02 UQ1 N/A N/A Q9DC70 N/A
    19 8ibd:E (4.2) BS01 peptide N/A N/A Q9D6J6 N/A
    20 8ibd:E (4.2) BS02 FES N/A N/A Q9D6J6 N/A
    21 8ibd:F (4.2) BS01 peptide N/A N/A Q91YT0 N/A
    22 8ibd:F (4.2) BS02 FMN N/A N/A Q91YT0 N/A
    23 8ibd:F (4.2) BS03 SF4 N/A N/A Q91YT0 N/A
    24 8ibd:G (4.2) BS01 SF4 N/A N/A Q91VD9 N/A
    25 8ibd:G (4.2) BS02 SF4 N/A N/A Q91VD9 N/A
    26 8ibd:G (4.2) BS03 FES N/A N/A Q91VD9 N/A
    27 8ibd:H (4.2) BS01 UQ9 N/A N/A P03888 N/A
    28 8ibd:I (4.2) BS01 SF4 N/A N/A Q8K3J1 N/A
    29 8ibd:I (4.2) BS02 SF4 N/A N/A Q8K3J1 N/A
    30 8ibd:O (4.2) BS01 ADP N/A N/A Q99LC3 N/A
    31 8ibd:P (4.2) BS01 NDP N/A N/A Q9DC69 N/A
    32 8ibd:R (4.2) BS01 ZN N/A N/A P52503 N/A
    33 8ibd:W (4.2) BS01 EHZ N/A N/A Q9CQZ5 N/A
    34 8ibd:n (4.2) BS01 EHZ N/A N/A Q9CQJ8 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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