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BioLiP
Download all results in tab-seperated text for 72 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8i9y:CA (3.1) BS01 rna ? GO:0000027 ... G0RXZ3 37129998
    2 8i9y:CB (3.1) BS01 rna ? GO:0000470 ... G0S7X0 37129998
    3 8i9y:CC (3.1) BS01 rna ? GO:0000463 ... G0SCK6 37129998
    4 8i9y:CE (3.1) BS01 rna 3.6.4.13 GO:0000463 ... G0RYU9 37129998
    5 8i9y:CF (3.1) BS01 rna ? GO:0000027 ... G0S616 37129998
    6 8i9y:CG (3.1) BS01 rna ? GO:0003723 ... G0S435 37129998
    7 8i9y:CH (3.1) BS01 rna ? GO:0003723 ... G0S8F1 37129998
    8 8i9y:CH (3.1) BS02 GTP ? GO:0003723 ... G0S8F1 37129998
    9 8i9y:CI (3.1) BS01 rna ? GO:0000463 ... G0S1H0 37129998
    10 8i9y:CJ (3.1) BS01 rna ? GO:0000463 ... G0SHX6 37129998
    11 8i9y:CJ (3.1) BS02 rna ? GO:0000463 ... G0SHX6 37129998
    12 8i9y:CK (3.1) BS01 rna ? GO:0000460 ... G0S081 37129998
    13 8i9y:CL (3.1) BS01 rna ? GO:0005525 ... G0SEW3 37129998
    14 8i9y:CM (3.1) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    15 8i9y:CM (3.1) BS02 rna ? GO:0000463 ... G0SFL0 37129998
    16 8i9y:CN (3.1) BS01 rna ? GO:0000054 ... G0S683 37129998
    17 8i9y:CO (3.1) BS01 rna ? GO:0030687 ... G0SHK0 37129998
    18 8i9y:CP (3.1) BS01 rna ? GO:0000470 ... G0SHQ0 37129998
    19 8i9y:CQ (3.1) BS01 rna ? GO:0005730 ... G0S497 37129998
    20 8i9y:CQ (3.1) BS02 ZN ? GO:0005730 ... G0S497 37129998
    21 8i9y:CR (3.1) BS01 rna ? GO:0005730 ... G0S832 37129998
    22 8i9y:CR (3.1) BS02 rna ? GO:0005730 ... G0S832 37129998
    23 8i9y:CS (3.1) BS01 rna ? GO:0000463 ... G0SGD8 37129998
    24 8i9y:CT (3.1) BS01 rna ? GO:0003682 ... G0S5L0 37129998
    25 8i9y:CU (3.1) BS01 rna ? GO:0005634 ... G0SGC2 37129998
    26 8i9y:CV (3.1) BS01 rna ? GO:0003735 ... G0SHJ6 37129998
    27 8i9y:CX (3.1) BS01 rna ? GO:0003729 ... G0SGJ0 37129998
    28 8i9y:CY (3.1) BS01 rna ? GO:0005634 ... G0SD05 37129998
    29 8i9y:Cz (3.1) BS01 rna ? GO:0005634 ... G0SCP3 37129998
    30 8i9y:LB (3.1) BS01 rna ? GO:0003723 ... G0RXW1 37129998
    31 8i9y:LC (3.1) BS01 rna ? GO:0003723 ... G0SFC3 37129998
    32 8i9y:LC (3.1) BS02 rna ? GO:0003723 ... G0SFC3 37129998
    33 8i9y:LE (3.1) BS01 rna ? GO:0000027 ... G0S0D6 37129998
    34 8i9y:LF (3.1) BS01 rna ? GO:0000463 ... G0SFL0 37129998
    35 8i9y:LG (3.1) BS01 rna ? GO:0000470 ... G0SAJ9 37129998
    36 8i9y:LG (3.1) BS02 rna ? GO:0000470 ... G0SAJ9 37129998
    37 8i9y:LH (3.1) BS01 rna ? GO:0003735 ... G0S0E5 37129998
    38 8i9y:LK (3.1) BS01 rna ? GO:0003735 ... G0SGH8 37129998
    39 8i9y:LL (3.1) BS01 rna ? GO:0003723 ... G0S992 37129998
    40 8i9y:LL (3.1) BS02 rna ? GO:0003723 ... G0S992 37129998
    41 8i9y:LM (3.1) BS01 rna ? GO:0003723 ... G0S1R0 37129998
    42 8i9y:LN (3.1) BS01 rna ? GO:0002181 ... G0RZ88 37129998
    43 8i9y:LN (3.1) BS02 rna ? GO:0002181 ... G0RZ88 37129998
    44 8i9y:LO (3.1) BS01 rna ? GO:0003729 ... G0SH61 37129998
    45 8i9y:LP (3.1) BS01 rna ? GO:0002181 ... G0SGY1 37129998
    46 8i9y:LP (3.1) BS02 rna ? GO:0002181 ... G0SGY1 37129998
    47 8i9y:LQ (3.1) BS01 rna ? GO:0003723 ... G0S9B5 37129998
    48 8i9y:LR (3.1) BS01 rna ? GO:0003735 ... G0S9T3 37129998
    49 8i9y:LS (3.1) BS01 rna ? GO:0003735 ... G0SCE2 37129998
    50 8i9y:LT (3.1) BS01 rna ? GO:0003735 ... G0S0Z3 37129998
    51 8i9y:LU (3.1) BS01 rna ? GO:0002181 ... G0SDS8 37129998
    52 8i9y:LV (3.1) BS01 rna ? GO:0003735 ... G0SI44 37129998
    53 8i9y:LX (3.1) BS01 rna ? GO:0000027 ... G0S507 37129998
    54 8i9y:LX (3.1) BS02 rna ? GO:0000027 ... G0S507 37129998
    55 8i9y:LY (3.1) BS01 rna ? GO:0002181 ... G0RYN9 37129998
    56 8i9y:LY (3.1) BS02 rna ? GO:0002181 ... G0RYN9 37129998
    57 8i9y:LZ (3.1) BS01 rna ? GO:0003735 ... G0RZE9 37129998
    58 8i9y:Lc (3.1) BS01 rna ? GO:0003723 ... G0SEI0 37129998
    59 8i9y:Ld (3.1) BS01 rna ? GO:0002181 ... G0SD68 37129998
    60 8i9y:Le (3.1) BS01 rna ? GO:0003735 ... G0S6V4 37129998
    61 8i9y:Lf (3.1) BS01 rna ? GO:0002181 ... G0SCL3 37129998
    62 8i9y:Lg (3.1) BS01 rna ? GO:0003735 ... G0SFN0 37129998
    63 8i9y:Lh (3.1) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    64 8i9y:Lh (3.1) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37129998
    65 8i9y:Li (3.1) BS01 rna ? GO:0002181 ... G0SBN1 37129998
    66 8i9y:Lj (3.1) BS01 rna ? GO:0003723 ... G0S101 37129998
    67 8i9y:Lj (3.1) BS02 rna ? GO:0003723 ... G0S101 37129998
    68 8i9y:Lj (3.1) BS03 ZN ? GO:0003723 ... G0S101 37129998
    69 8i9y:Lk (3.1) BS01 rna ? GO:0003735 ... G0SG89 37129998
    70 8i9y:Ll (3.1) BS01 rna ? GO:0003735 ... Q2H9R2 37129998
    71 8i9y:Ll (3.1) BS02 rna ? GO:0003735 ... Q2H9R2 37129998
    72 8i9y:Lq (3.1) BS01 rna ? GO:0000470 ... G0S4Z9 37129998
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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