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BioLiP
Download all results in tab-seperated text for 44 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8hku:AL1P (2.72) BS01 rna ? GO:0000049 ... P35024 37604686
    2 8hku:AL2P (2.72) BS01 rna ? GO:0002181 ... Q4JB43 37604686
    3 8hku:AL3P (2.72) BS01 rna ? GO:0003723 ... Q4JB40 37604686
    4 8hku:AL4P (2.72) BS01 rna ? GO:0003723 ... Q4JB41 37604686
    5 8hku:AL5P (2.72) BS01 rna ? GO:0000049 ... P41202 37604686
    6 8hku:AL5P (2.72) BS02 rna ? GO:0000049 ... P41202 37604686
    7 8hku:AL6P (2.72) BS01 rna ? GO:0002181 ... O05637 37604686
    8 8hku:ALX0 (2.72) BS01 rna ? GO:0003735 ... P38613 37604686
    9 8hku:ARF1 (2.72) BS01 rna ? GO:0003747 ... Q4JA21 37604686
    10 8hku:L10E (2.72) BS01 rna ? GO:0000027 ... Q4JC84 37604686
    11 8hku:L13P (2.72) BS01 rna ? GO:0003729 ... P39473 37604686
    12 8hku:L141 (2.72) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    13 8hku:L142 (2.72) BS01 rna ? GO:0003723 ... Q4JAJ9 37604686
    14 8hku:L14P (2.72) BS01 rna ? GO:0003735 ... Q4JB50 37604686
    15 8hku:L15E (2.72) BS01 rna ? GO:0003735 ... Q4JB20 37604686
    16 8hku:L15P (2.72) BS01 rna ? GO:0003735 ... O05643 37604686
    17 8hku:L18E (2.72) BS01 rna ? GO:0003735 ... P39474 37604686
    18 8hku:L18P (2.72) BS01 rna ? GO:0000027 ... O05640 37604686
    19 8hku:L18P (2.72) BS02 rna ? GO:0000027 ... O05640 37604686
    20 8hku:L19E (2.72) BS01 rna ? GO:0003723 ... O05639 37604686
    21 8hku:L21E (2.72) BS01 rna ? GO:0003735 ... Q4JB11 37604686
    22 8hku:L21E (2.72) BS02 rna ? GO:0003735 ... Q4JB11 37604686
    23 8hku:L22P (2.72) BS01 rna ? GO:0002181 ... Q4JB45 37604686
    24 8hku:L23P (2.72) BS01 rna ? GO:0000027 ... Q4JB42 37604686
    25 8hku:L24E (2.72) BS01 rna ? GO:0003735 ... Q4JAV2 37604686
    26 8hku:L24P (2.72) BS01 rna ? GO:0002181 ... O05633 37604686
    27 8hku:L29P (2.72) BS01 rna ? GO:0003735 ... Q4JB47 37604686
    28 8hku:L30E (2.72) BS01 rna ? GO:0003723 ... P11522 37604686
    29 8hku:L30P (2.72) BS01 rna ? GO:0000463 ... O05642 37604686
    30 8hku:L30P (2.72) BS02 rna ? GO:0000463 ... O05642 37604686
    31 8hku:L31E (2.72) BS01 rna ? GO:0003735 ... P38618 37604686
    32 8hku:L32E (2.72) BS01 rna ? GO:0003735 ... O05638 37604686
    33 8hku:L34E (2.72) BS01 rna ? GO:0003735 ... O05981 37604686
    34 8hku:L37A (2.72) BS01 rna ? GO:0003735 ... Q4JB29 37604686
    35 8hku:L37E (2.72) BS01 rna ? GO:0003735 ... Q4JAZ9 37604686
    36 8hku:L39E (2.72) BS01 rna ? GO:0003735 ... P13005 37604686
    37 8hku:L40E (2.72) BS01 rna ? GO:0003735 ... Q4JAP0 37604686
    38 8hku:L44E (2.72) BS01 rna ? GO:0003735 ... Q4J9B2 37604686
    39 8hku:L44E (2.72) BS02 rna ? GO:0003735 ... Q4J9B2 37604686
    40 8hku:L45A (2.72) BS01 rna ? N/A Q4J9G6 37604686
    41 8hku:L46A (2.72) BS01 rna ? N/A Q4J953 37604686
    42 8hku:L47A (2.72) BS01 rna ? N/A F2Z6C4 37604686
    43 8hku:L7A1 (2.72) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    44 8hku:L7A2 (2.72) BS01 rna ? GO:0001682 ... Q4J8P1 37604686
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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