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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fzf:1 (3.2) BS01 rna N/A N/A N/A 39030416
    2 8fzf:2 (3.2) BS01 rna N/A GO:0005840 ... C3SR32 39030416
    3 8fzf:2 (3.2) BS02 rna N/A GO:0005840 ... C3SR32 39030416
    4 8fzf:3 (3.2) BS01 rna N/A GO:0002181 ... P0A7M9 39030416
    5 8fzf:3 (3.2) BS02 ZN N/A GO:0002181 ... P0A7M9 39030416
    6 8fzf:4 (3.2) BS01 rna N/A N/A N/A 39030416
    7 8fzf:5 (3.2) BS01 rna N/A GO:0003735 ... C3SME7 39030416
    8 8fzf:6 (3.2) BS01 rna N/A GO:0005840 ... B7MGC4 39030416
    9 8fzf:7 (3.2) BS01 rna N/A GO:0002181 ... P0A7Q1 39030416
    10 8fzf:8 (3.2) BS01 rna N/A GO:0005737 ... A0A0E2L017 39030416
    11 8fzf:8 (3.2) BS02 ZN N/A GO:0005737 ... A0A0E2L017 39030416
    12 8fzf:C (3.2) BS01 rna N/A GO:0000027 ... P60422 39030416
    13 8fzf:C (3.2) BS02 rna N/A GO:0000027 ... P60422 39030416
    14 8fzf:D (3.2) BS01 rna N/A N/A N/A 39030416
    15 8fzf:E (3.2) BS01 rna N/A GO:0003735 ... A1AGK6 39030416
    16 8fzf:F (3.2) BS01 rna N/A GO:0000049 ... A0A140N5A3 39030416
    17 8fzf:F (3.2) BS02 rna N/A GO:0000049 ... A0A140N5A3 39030416
    18 8fzf:G (3.2) BS01 rna N/A GO:0002181 ... C3SR17 39030416
    19 8fzf:I (3.2) BS01 rna N/A GO:0002181 ... P0A7J3 39030416
    20 8fzf:J (3.2) BS01 rna N/A GO:0000027 ... P0A7J7 39030416
    21 8fzf:L (3.2) BS01 rna N/A N/A N/A 39030416
    22 8fzf:M (3.2) BS01 rna N/A GO:0003735 ... S1NW45 39030416
    23 8fzf:M (3.2) BS02 rna N/A GO:0003735 ... S1NW45 39030416
    24 8fzf:N (3.2) BS01 rna N/A GO:0003735 ... S5NDE9 39030416
    25 8fzf:O (3.2) BS01 rna N/A N/A N/A 39030416
    26 8fzf:P (3.2) BS01 rna N/A GO:0003735 ... C3SR72 39030416
    27 8fzf:Q (3.2) BS01 rna N/A N/A N/A 39030416
    28 8fzf:Q (3.2) BS02 rna N/A N/A N/A 39030416
    29 8fzf:R (3.2) BS01 rna N/A N/A N/A 39030416
    30 8fzf:S (3.2) BS01 rna N/A GO:0000027 ... B7MAS6 39030416
    31 8fzf:T (3.2) BS01 rna N/A GO:0003735 ... C3SSG2 39030416
    32 8fzf:U (3.2) BS01 rna N/A GO:0002181 ... P61175 39030416
    33 8fzf:V (3.2) BS01 rna N/A N/A N/A 39030416
    34 8fzf:W (3.2) BS01 rna N/A N/A N/A 39030416
    35 8fzf:X (3.2) BS01 rna N/A N/A N/A 39030416
    36 8fzf:Y (3.2) BS01 rna N/A GO:0000027 ... P0A7L8 39030416
    37 8fzf:Y (3.2) BS02 rna N/A GO:0000027 ... P0A7L8 39030416
    38 8fzf:Z (3.2) BS01 rna N/A GO:0003735 ... A0A1X3JA73 39030416
    39 8fzf:b (3.2) BS01 rna N/A GO:0000028 ... J7QM75 39030416
    40 8fzf:c (3.2) BS01 rna N/A GO:0003729 ... B7MCS9 39030416
    41 8fzf:d (3.2) BS01 rna N/A GO:0000028 ... P0A7V8 39030416
    42 8fzf:e (3.2) BS01 rna N/A GO:0000028 ... P0A7W1 39030416
    43 8fzf:f (3.2) BS01 rna N/A GO:0000028 ... C3SFQ7 39030416
    44 8fzf:g (3.2) BS01 rna N/A N/A P02359 39030416
    45 8fzf:h (3.2) BS01 rna N/A N/A N/A 39030416
    46 8fzf:i (3.2) BS01 rna N/A GO:0000028 ... C3SRY2 39030416
    47 8fzf:i (3.2) BS02 rna N/A GO:0000028 ... C3SRY2 39030416
    48 8fzf:j (3.2) BS01 rna N/A N/A N/A 39030416
    49 8fzf:k (3.2) BS01 rna N/A GO:0005840 ... A0A0H3PWX2 39030416
    50 8fzf:l (3.2) BS01 rna N/A GO:0000049 ... A0A0F1AUC4 39030416
    51 8fzf:m (3.2) BS01 rna N/A GO:0000049 ... A0A7U9IV78 39030416
    52 8fzf:n (3.2) BS01 rna N/A N/A A0A2X1PQW4 39030416
    53 8fzf:o (3.2) BS01 rna N/A GO:0000028 ... C3SSQ7 39030416
    54 8fzf:o (3.2) BS02 rna N/A GO:0000028 ... C3SSQ7 39030416
    55 8fzf:p (3.2) BS01 rna N/A GO:0000028 ... C3SYP2 39030416
    56 8fzf:q (3.2) BS01 rna N/A GO:0000028 ... C3SQY7 39030416
    57 8fzf:r (3.2) BS01 rna N/A GO:0003735 ... A0A0E2KXL3 39030416
    58 8fzf:s (3.2) BS01 rna N/A N/A N/A 39030416
    59 8fzf:t (3.2) BS01 rna N/A GO:0000028 ... C3TRH7 39030416
    60 8fzf:u (3.2) BS01 rna N/A GO:0005840 ... A0A0E2L2J1 39030416
    61 8fzf:v (3.2) BS01 rna N/A GO:0003924 ... P0A7I4 39030416
    62 8fzf:v (3.2) BS02 rna N/A GO:0003924 ... P0A7I4 39030416
    63 8fzf:v (3.2) BS03 G4P N/A GO:0003924 ... P0A7I4 39030416
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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