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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 189 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ev6:10 (2.946) BS01 rna ? GO:0003735 ... P60493 37537169
    2 8ev6:10 (2.946) BS02 rna ? GO:0003735 ... P60493 37537169
    3 8ev6:11 (2.946) BS01 rna ? GO:0003735 ... P60494 37537169
    4 8ev6:12 (2.946) BS01 rna ? GO:0003735 ... Q5SHP6 37537169
    5 8ev6:13 (2.946) BS01 rna ? GO:0003735 ... Q5SHQ6 37537169
    6 8ev6:13 (2.946) BS02 rna ? GO:0003735 ... Q5SHQ6 37537169
    7 8ev6:14 (2.946) BS01 rna ? GO:0003735 ... Q5SJE1 37537169
    8 8ev6:14 (2.946) BS02 ZN ? GO:0003735 ... Q5SJE1 37537169
    9 8ev6:15 (2.946) BS01 rna ? GO:0003735 ... P80339 37537169
    10 8ev6:15 (2.946) BS02 ZN ? GO:0003735 ... P80339 37537169
    11 8ev6:16 (2.946) BS01 rna ? GO:0000049 ... P35871 37537169
    12 8ev6:16 (2.946) BS02 ZN ? GO:0000049 ... P35871 37537169
    13 8ev6:17 (2.946) BS01 rna ? GO:0003735 ... P80340 37537169
    14 8ev6:18 (2.946) BS01 rna ? GO:0003735 ... Q5SKU1 37537169
    15 8ev6:18 (2.946) BS02 MG ? GO:0003735 ... Q5SKU1 37537169
    16 8ev6:18 (2.946) BS03 MG ? GO:0003735 ... Q5SKU1 37537169
    17 8ev6:18 (2.946) BS04 MG ? GO:0003735 ... Q5SKU1 37537169
    18 8ev6:19 (2.946) BS01 rna ? GO:0003735 ... Q5SHR2 37537169
    19 8ev6:19 (2.946) BS02 ZN ? GO:0003735 ... Q5SHR2 37537169
    20 8ev6:1D (2.946) BS01 rna ? GO:0002181 ... P60405 37537169
    21 8ev6:1D (2.946) BS02 rna ? GO:0002181 ... P60405 37537169
    22 8ev6:1D (2.946) BS03 MG ? GO:0002181 ... P60405 37537169
    23 8ev6:1D (2.946) BS04 MG ? GO:0002181 ... P60405 37537169
    24 8ev6:1D (2.946) BS05 MG ? GO:0002181 ... P60405 37537169
    25 8ev6:1D (2.946) BS06 MG ? GO:0002181 ... P60405 37537169
    26 8ev6:1E (2.946) BS01 rna ? GO:0003735 ... Q5SHN8 37537169
    27 8ev6:1E (2.946) BS02 MG ? GO:0003735 ... Q5SHN8 37537169
    28 8ev6:1E (2.946) BS03 MG ? GO:0003735 ... Q5SHN8 37537169
    29 8ev6:1F (2.946) BS01 rna ? GO:0003735 ... Q5SHN9 37537169
    30 8ev6:1F (2.946) BS02 MG ? GO:0003735 ... Q5SHN9 37537169
    31 8ev6:1F (2.946) BS03 MG ? GO:0003735 ... Q5SHN9 37537169
    32 8ev6:1F (2.946) BS04 MG ? GO:0003735 ... Q5SHN9 37537169
    33 8ev6:1G (2.946) BS01 rna ? GO:0000049 ... Q5SHQ0 37537169
    34 8ev6:1G (2.946) BS02 rna ? GO:0000049 ... Q5SHQ0 37537169
    35 8ev6:1G (2.946) BS03 rna ? GO:0000049 ... Q5SHQ0 37537169
    36 8ev6:1G (2.946) BS04 MG ? GO:0000049 ... Q5SHQ0 37537169
    37 8ev6:1G (2.946) BS05 MG ? GO:0000049 ... Q5SHQ0 37537169
    38 8ev6:1H (2.946) BS01 rna ? GO:0002181 ... P0DOY8 37537169
    39 8ev6:1I (2.946) BS01 rna ? GO:0003735 ... Q5SLQ1 37537169
    40 8ev6:1N (2.946) BS01 rna ? GO:0003729 ... P60488 37537169
    41 8ev6:1N (2.946) BS02 MG ? GO:0003729 ... P60488 37537169
    42 8ev6:1O (2.946) BS01 rna ? GO:0003735 ... Q5SHP8 37537169
    43 8ev6:1O (2.946) BS02 rna ? GO:0003735 ... Q5SHP8 37537169
    44 8ev6:1O (2.946) BS03 AKN ? GO:0003735 ... Q5SHP8 37537169
    45 8ev6:1P (2.946) BS01 rna ? GO:0003735 ... Q5SHQ7 37537169
    46 8ev6:1Q (2.946) BS01 rna ? GO:0000049 ... P60489 37537169
    47 8ev6:1Q (2.946) BS02 rna ? GO:0000049 ... P60489 37537169
    48 8ev6:1Q (2.946) BS03 rna ? GO:0000049 ... P60489 37537169
    49 8ev6:1Q (2.946) BS04 MG ? GO:0000049 ... P60489 37537169
    50 8ev6:1Q (2.946) BS05 MG ? GO:0000049 ... P60489 37537169
    51 8ev6:1R (2.946) BS01 rna ? GO:0003735 ... Q9Z9H5 37537169
    52 8ev6:1S (2.946) BS01 rna ? GO:0003735 ... Q5SHQ4 37537169
    53 8ev6:1S (2.946) BS02 rna ? GO:0003735 ... Q5SHQ4 37537169
    54 8ev6:1T (2.946) BS01 rna ? GO:0003735 ... P60490 37537169
    55 8ev6:1T (2.946) BS02 rna ? GO:0003735 ... P60490 37537169
    56 8ev6:1U (2.946) BS01 rna ? GO:0000027 ... P60491 37537169
    57 8ev6:1U (2.946) BS02 MG ? GO:0000027 ... P60491 37537169
    58 8ev6:1V (2.946) BS01 rna ? GO:0003723 ... P60492 37537169
    59 8ev6:1V (2.946) BS02 MG ? GO:0003723 ... P60492 37537169
    60 8ev6:1W (2.946) BS01 rna ? GO:0003735 ... Q5SHP3 37537169
    61 8ev6:1W (2.946) BS02 MG ? GO:0003735 ... Q5SHP3 37537169
    62 8ev6:1X (2.946) BS01 rna ? GO:0000027 ... Q5SHP0 37537169
    63 8ev6:1Y (2.946) BS01 rna ? GO:0003723 ... Q5SHP9 37537169
    64 8ev6:1Y (2.946) BS02 ZN ? GO:0003723 ... Q5SHP9 37537169
    65 8ev6:1Z (2.946) BS01 rna ? GO:0003723 ... Q5SHZ1 37537169
    66 8ev6:1Z (2.946) BS02 rna ? GO:0003723 ... Q5SHZ1 37537169
    67 8ev6:1b (2.946) BS01 rna ? GO:0003735 ... P80371 37537169
    68 8ev6:1c (2.946) BS01 rna ? GO:0003676 ... P80372 37537169
    69 8ev6:1d (2.946) BS01 rna ? GO:0003723 ... P80373 37537169
    70 8ev6:1d (2.946) BS02 MG ? GO:0003723 ... P80373 37537169
    71 8ev6:1d (2.946) BS03 SF4 ? GO:0003723 ... P80373 37537169
    72 8ev6:1e (2.946) BS01 rna ? GO:0003723 ... Q5SHQ5 37537169
    73 8ev6:1e (2.946) BS02 MG ? GO:0003723 ... Q5SHQ5 37537169
    74 8ev6:1f (2.946) BS01 rna ? GO:0003735 ... Q5SLP8 37537169
    75 8ev6:1f (2.946) BS02 MG ? GO:0003735 ... Q5SLP8 37537169
    76 8ev6:1f (2.946) BS03 MG ? GO:0003735 ... Q5SLP8 37537169
    77 8ev6:1g (2.946) BS01 rna ? GO:0000028 ... P17291 37537169
    78 8ev6:1g (2.946) BS02 rna ? GO:0000028 ... P17291 37537169
    79 8ev6:1h (2.946) BS01 rna ? GO:0003735 ... P0DOY9 37537169
    80 8ev6:1i (2.946) BS01 rna ? GO:0000049 ... P80374 37537169
    81 8ev6:1i (2.946) BS02 rna ? GO:0000049 ... P80374 37537169
    82 8ev6:1j (2.946) BS01 rna ? GO:0000049 ... Q5SHN7 37537169
    83 8ev6:1k (2.946) BS01 rna ? GO:0003735 ... P80376 37537169
    84 8ev6:1k (2.946) BS02 MG ? GO:0003735 ... P80376 37537169
    85 8ev6:1l (2.946) BS01 rna ? GO:0000049 ... Q5SHN3 37537169
    86 8ev6:1l (2.946) BS02 MG ? GO:0000049 ... Q5SHN3 37537169
    87 8ev6:1l (2.946) BS03 MG ? GO:0000049 ... Q5SHN3 37537169
    88 8ev6:1l (2.946) BS04 MG ? GO:0000049 ... Q5SHN3 37537169
    89 8ev6:1m (2.946) BS01 rna ? GO:0000049 ... P80377 37537169
    90 8ev6:1m (2.946) BS02 rna ? GO:0000049 ... P80377 37537169
    91 8ev6:1m (2.946) BS03 rna ? GO:0000049 ... P80377 37537169
    92 8ev6:1m (2.946) BS04 MG ? GO:0000049 ... P80377 37537169
    93 8ev6:1n (2.946) BS01 rna ? GO:0003735 ... P0DOY6 37537169
    94 8ev6:1n (2.946) BS02 ZN ? GO:0003735 ... P0DOY6 37537169
    95 8ev6:1o (2.946) BS01 rna ? GO:0003735 ... Q5SJ76 37537169
    96 8ev6:1o (2.946) BS02 rna ? GO:0003735 ... Q5SJ76 37537169
    97 8ev6:1p (2.946) BS01 rna ? GO:0003735 ... Q5SJH3 37537169
    98 8ev6:1p (2.946) BS02 MG ? GO:0003735 ... Q5SJH3 37537169
    99 8ev6:1q (2.946) BS01 rna ? GO:0003735 ... P0DOY7 37537169
    100 8ev6:1r (2.946) BS01 rna ? GO:0003735 ... Q5SLQ0 37537169
    101 8ev6:1s (2.946) BS01 rna ? GO:0000028 ... Q5SHP2 37537169
    102 8ev6:1t (2.946) BS01 rna ? GO:0003723 ... P80380 37537169
    103 8ev6:20 (2.946) BS01 rna ? GO:0003735 ... P60493 37537169
    104 8ev6:20 (2.946) BS02 rna ? GO:0003735 ... P60493 37537169
    105 8ev6:20 (2.946) BS03 rna ? GO:0003735 ... P60493 37537169
    106 8ev6:21 (2.946) BS01 rna ? GO:0003735 ... P60494 37537169
    107 8ev6:21 (2.946) BS02 rna ? GO:0003735 ... P60494 37537169
    108 8ev6:22 (2.946) BS01 rna ? GO:0003735 ... Q5SHP6 37537169
    109 8ev6:23 (2.946) BS01 rna ? GO:0003735 ... Q5SHQ6 37537169
    110 8ev6:23 (2.946) BS02 rna ? GO:0003735 ... Q5SHQ6 37537169
    111 8ev6:24 (2.946) BS01 rna ? GO:0003735 ... Q5SJE1 37537169
    112 8ev6:24 (2.946) BS02 ZN ? GO:0003735 ... Q5SJE1 37537169
    113 8ev6:25 (2.946) BS01 rna ? GO:0003735 ... P80339 37537169
    114 8ev6:25 (2.946) BS02 ZN ? GO:0003735 ... P80339 37537169
    115 8ev6:26 (2.946) BS01 rna ? GO:0000049 ... P35871 37537169
    116 8ev6:26 (2.946) BS02 ZN ? GO:0000049 ... P35871 37537169
    117 8ev6:27 (2.946) BS01 rna ? GO:0003735 ... P80340 37537169
    118 8ev6:28 (2.946) BS01 rna ? GO:0003735 ... Q5SKU1 37537169
    119 8ev6:29 (2.946) BS01 rna ? GO:0003735 ... Q5SHR2 37537169
    120 8ev6:29 (2.946) BS02 ZN ? GO:0003735 ... Q5SHR2 37537169
    121 8ev6:2D (2.946) BS01 rna ? GO:0002181 ... P60405 37537169
    122 8ev6:2D (2.946) BS02 rna ? GO:0002181 ... P60405 37537169
    123 8ev6:2D (2.946) BS03 MG ? GO:0002181 ... P60405 37537169
    124 8ev6:2D (2.946) BS04 MG ? GO:0002181 ... P60405 37537169
    125 8ev6:2D (2.946) BS05 MG ? GO:0002181 ... P60405 37537169
    126 8ev6:2E (2.946) BS01 rna ? GO:0003735 ... Q5SHN8 37537169
    127 8ev6:2E (2.946) BS02 MG ? GO:0003735 ... Q5SHN8 37537169
    128 8ev6:2F (2.946) BS01 rna ? GO:0003735 ... Q5SHN9 37537169
    129 8ev6:2F (2.946) BS02 MG ? GO:0003735 ... Q5SHN9 37537169
    130 8ev6:2F (2.946) BS03 MG ? GO:0003735 ... Q5SHN9 37537169
    131 8ev6:2F (2.946) BS04 MG ? GO:0003735 ... Q5SHN9 37537169
    132 8ev6:2G (2.946) BS01 rna ? GO:0000049 ... Q5SHQ0 37537169
    133 8ev6:2G (2.946) BS02 rna ? GO:0000049 ... Q5SHQ0 37537169
    134 8ev6:2G (2.946) BS03 rna ? GO:0000049 ... Q5SHQ0 37537169
    135 8ev6:2H (2.946) BS01 rna ? GO:0002181 ... P0DOY8 37537169
    136 8ev6:2I (2.946) BS01 rna ? GO:0003735 ... Q5SLQ1 37537169
    137 8ev6:2N (2.946) BS01 rna ? GO:0003729 ... P60488 37537169
    138 8ev6:2O (2.946) BS01 rna ? GO:0003735 ... Q5SHP8 37537169
    139 8ev6:2O (2.946) BS02 rna ? GO:0003735 ... Q5SHP8 37537169
    140 8ev6:2O (2.946) BS03 MG ? GO:0003735 ... Q5SHP8 37537169
    141 8ev6:2O (2.946) BS04 AKN ? GO:0003735 ... Q5SHP8 37537169
    142 8ev6:2P (2.946) BS01 rna ? GO:0003735 ... Q5SHQ7 37537169
    143 8ev6:2P (2.946) BS02 MG ? GO:0003735 ... Q5SHQ7 37537169
    144 8ev6:2Q (2.946) BS01 rna ? GO:0000049 ... P60489 37537169
    145 8ev6:2Q (2.946) BS02 rna ? GO:0000049 ... P60489 37537169
    146 8ev6:2Q (2.946) BS03 rna ? GO:0000049 ... P60489 37537169
    147 8ev6:2Q (2.946) BS04 MG ? GO:0000049 ... P60489 37537169
    148 8ev6:2R (2.946) BS01 rna ? GO:0003735 ... Q9Z9H5 37537169
    149 8ev6:2S (2.946) BS01 rna ? GO:0003735 ... Q5SHQ4 37537169
    150 8ev6:2S (2.946) BS02 rna ? GO:0003735 ... Q5SHQ4 37537169
    151 8ev6:2T (2.946) BS01 rna ? GO:0003735 ... P60490 37537169
    152 8ev6:2T (2.946) BS02 rna ? GO:0003735 ... P60490 37537169
    153 8ev6:2U (2.946) BS01 rna ? GO:0000027 ... P60491 37537169
    154 8ev6:2V (2.946) BS01 rna ? GO:0003723 ... P60492 37537169
    155 8ev6:2W (2.946) BS01 rna ? GO:0003735 ... Q5SHP3 37537169
    156 8ev6:2W (2.946) BS02 MG ? GO:0003735 ... Q5SHP3 37537169
    157 8ev6:2X (2.946) BS01 rna ? GO:0000027 ... Q5SHP0 37537169
    158 8ev6:2Y (2.946) BS01 rna ? GO:0003723 ... Q5SHP9 37537169
    159 8ev6:2Y (2.946) BS02 ZN ? GO:0003723 ... Q5SHP9 37537169
    160 8ev6:2Z (2.946) BS01 rna ? GO:0003723 ... Q5SHZ1 37537169
    161 8ev6:2Z (2.946) BS02 rna ? GO:0003723 ... Q5SHZ1 37537169
    162 8ev6:2b (2.946) BS01 rna ? GO:0003735 ... P80371 37537169
    163 8ev6:2c (2.946) BS01 rna ? GO:0003676 ... P80372 37537169
    164 8ev6:2d (2.946) BS01 rna ? GO:0003723 ... P80373 37537169
    165 8ev6:2d (2.946) BS02 SF4 ? GO:0003723 ... P80373 37537169
    166 8ev6:2e (2.946) BS01 rna ? GO:0003723 ... Q5SHQ5 37537169
    167 8ev6:2e (2.946) BS02 MG ? GO:0003723 ... Q5SHQ5 37537169
    168 8ev6:2f (2.946) BS01 rna ? GO:0003735 ... Q5SLP8 37537169
    169 8ev6:2g (2.946) BS01 rna ? GO:0000028 ... P17291 37537169
    170 8ev6:2g (2.946) BS02 rna ? GO:0000028 ... P17291 37537169
    171 8ev6:2g (2.946) BS03 MG ? GO:0000028 ... P17291 37537169
    172 8ev6:2h (2.946) BS01 rna ? GO:0003735 ... P0DOY9 37537169
    173 8ev6:2i (2.946) BS01 rna ? GO:0000049 ... P80374 37537169
    174 8ev6:2i (2.946) BS02 rna ? GO:0000049 ... P80374 37537169
    175 8ev6:2j (2.946) BS01 rna ? GO:0000049 ... Q5SHN7 37537169
    176 8ev6:2k (2.946) BS01 rna ? GO:0003735 ... P80376 37537169
    177 8ev6:2l (2.946) BS01 rna ? GO:0000049 ... Q5SHN3 37537169
    178 8ev6:2l (2.946) BS02 rna ? GO:0000049 ... Q5SHN3 37537169
    179 8ev6:2m (2.946) BS01 rna ? GO:0000049 ... P80377 37537169
    180 8ev6:2n (2.946) BS01 rna ? GO:0003735 ... P0DOY6 37537169
    181 8ev6:2n (2.946) BS02 ZN ? GO:0003735 ... P0DOY6 37537169
    182 8ev6:2o (2.946) BS01 rna ? GO:0003735 ... Q5SJ76 37537169
    183 8ev6:2o (2.946) BS02 rna ? GO:0003735 ... Q5SJ76 37537169
    184 8ev6:2p (2.946) BS01 rna ? GO:0003735 ... Q5SJH3 37537169
    185 8ev6:2q (2.946) BS01 rna ? GO:0003735 ... P0DOY7 37537169
    186 8ev6:2r (2.946) BS01 rna ? GO:0003735 ... Q5SLQ0 37537169
    187 8ev6:2s (2.946) BS01 rna ? GO:0000028 ... Q5SHP2 37537169
    188 8ev6:2t (2.946) BS01 rna ? GO:0003723 ... P80380 37537169
    189 8ev6:2t (2.946) BS02 MG ? GO:0003723 ... P80380 37537169
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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