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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8e73:1M (3.2) BS01 U10 7.1.1.2 GO:0003954 ... E9KZL0 36581760
    2 8e73:A (3.2) BS01 peptide ? GO:0004222 ... A0A1S3TWG4 36581760
    3 8e73:A6 (3.2) BS01 ZMP ? GO:0005739 ... A0A1S3W1K8 36581760
    4 8e73:A9 (3.2) BS01 NDP ? GO:0005739 ... A0A1S3V8W7 36581760
    5 8e73:AB (3.2) BS01 ZMP ? GO:0000035 ... A0A1S3VXS7 36581760
    6 8e73:B9 (3.2) BS01 ZMP ? GO:0005739 ... A0A1S3U1J6 36581760
    7 8e73:C (3.2) BS01 HEM ? GO:0005739 ... E9KZM1 36581760
    8 8e73:C (3.2) BS02 HEM ? GO:0005739 ... E9KZM1 36581760
    9 8e73:D (3.2) BS01 HEC ? GO:0005743 ... A0A1S3W199 36581760
    10 8e73:E (3.2) BS01 peptide 7.1.1.8 GO:0005739 ... A0A1S3TB49 36581760
    11 8e73:FD (3.2) BS01 FE ? GO:0005739 ... A0A1S3VXN7 36581760
    12 8e73:G2 (3.2) BS01 ZN ? GO:0005737 ... A0A1S3U544 36581760
    13 8e73:J (3.2) BS01 peptide ? GO:0005739 ... A0A1S3TQD2 36581760
    14 8e73:M (3.2) BS01 peptide ? GO:0004222 ... A0A1S3TWG4 36581760
    15 8e73:O (3.2) BS01 HEM ? GO:0005739 ... E9KZM1 36581760
    16 8e73:O (3.2) BS02 HEM ? GO:0005739 ... E9KZM1 36581760
    17 8e73:P (3.2) BS01 HEC ? GO:0005743 ... A0A1S3W199 36581760
    18 8e73:Q (3.2) BS01 peptide 7.1.1.8 GO:0005739 ... A0A1S3TB49 36581760
    19 8e73:S1 (3.2) BS01 SF4 ? GO:0003954 ... A0A1S3TQ85 36581760
    20 8e73:S1 (3.2) BS02 FES ? GO:0003954 ... A0A1S3TQ85 36581760
    21 8e73:S1 (3.2) BS03 SF4 ? GO:0003954 ... A0A1S3TQ85 36581760
    22 8e73:S2 (3.2) BS01 SF4 ? GO:0005739 ... E9KZN6 36581760
    23 8e73:S6 (3.2) BS01 ZN ? GO:0005739 ... A0A1S3VYF3 36581760
    24 8e73:S7 (3.2) BS01 U10 ? GO:0005739 ... A0A1S3U8J5 36581760
    25 8e73:S7 (3.2) BS02 SF4 ? GO:0005739 ... A0A1S3U8J5 36581760
    26 8e73:S8 (3.2) BS01 SF4 ? GO:0003954 ... A0A1S3VGS8 36581760
    27 8e73:S8 (3.2) BS02 SF4 ? GO:0003954 ... A0A1S3VGS8 36581760
    28 8e73:V (3.2) BS01 peptide ? GO:0005739 ... A0A1S3TQD2 36581760
    29 8e73:V1 (3.2) BS01 FMN 7.1.1.2 GO:0005739 ... A0A1S3V7V2 36581760
    30 8e73:V1 (3.2) BS02 SF4 7.1.1.2 GO:0005739 ... A0A1S3V7V2 36581760
    31 8e73:V2 (3.2) BS01 FES ? GO:0003954 ... A0A1S3U769 36581760
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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