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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cd1:2 (3.0) BS01 rna ? GO:0003735 ... Q9HZN4 38443577
    2 8cd1:4 (3.0) BS01 rna ? GO:0003735 ... P29436 38443577
    3 8cd1:5 (3.0) BS01 rna ? GO:0003735 ... Q9I0A1 38443577
    4 8cd1:6 (3.0) BS01 rna ? GO:0003735 ... Q9HWF6 38443577
    5 8cd1:C (3.0) BS01 rna ? GO:0002181 ... Q9HWD8 38443577
    6 8cd1:D (3.0) BS01 rna ? GO:0003735 ... Q9HWD5 38443577
    7 8cd1:E (3.0) BS01 rna ? GO:0003735 ... Q9HWD6 38443577
    8 8cd1:F (3.0) BS01 rna ? GO:0000049 ... Q9HWE7 38443577
    9 8cd1:F (3.0) BS02 rna ? GO:0000049 ... Q9HWE7 38443577
    10 8cd1:F (3.0) BS03 rna ? GO:0000049 ... Q9HWE7 38443577
    11 8cd1:G (3.0) BS01 rna ? GO:0002181 ... Q9HWF0 38443577
    12 8cd1:H (3.0) BS01 rna ? GO:0003735 ... Q9HUN2 38443577
    13 8cd1:J (3.0) BS01 rna ? GO:0003729 ... Q9HVY2 38443577
    14 8cd1:K (3.0) BS01 rna ? GO:0003735 ... Q9HWE5 38443577
    15 8cd1:K (3.0) BS02 rna ? GO:0003735 ... Q9HWE5 38443577
    16 8cd1:L (3.0) BS01 rna ? GO:0003735 ... Q9HWF4 38443577
    17 8cd1:Le (3.0) BS01 rna ? GO:0003735 ... Q9HUD0 38443577
    18 8cd1:Le (3.0) BS02 rna ? GO:0003735 ... Q9HUD0 38443577
    19 8cd1:M (3.0) BS01 rna ? GO:0000049 ... Q9HWE2 38443577
    20 8cd1:M (3.0) BS02 rna ? GO:0000049 ... Q9HWE2 38443577
    21 8cd1:N (3.0) BS01 rna ? GO:0003735 ... O52761 38443577
    22 8cd1:O (3.0) BS01 rna ? GO:0003735 ... Q9HWF1 38443577
    23 8cd1:O (3.0) BS02 rna ? GO:0003735 ... Q9HWF1 38443577
    24 8cd1:P (3.0) BS01 rna ? GO:0003735 ... Q9HXQ2 38443577
    25 8cd1:P (3.0) BS02 rna ? GO:0003735 ... Q9HXQ2 38443577
    26 8cd1:P (3.0) BS03 MG ? GO:0003735 ... Q9HXQ2 38443577
    27 8cd1:Q (3.0) BS01 rna ? GO:0000027 ... Q9I0A2 38443577
    28 8cd1:R (3.0) BS01 rna ? GO:0003723 ... Q9HVL6 38443577
    29 8cd1:S (3.0) BS01 rna ? GO:0003735 ... Q9HWE0 38443577
    30 8cd1:T (3.0) BS01 rna ? GO:0000027 ... Q9HWD7 38443577
    31 8cd1:U (3.0) BS01 rna ? GO:0003723 ... Q9HWE6 38443577
    32 8cd1:V (3.0) BS01 rna ? GO:0003723 ... Q9HVC4 38443577
    33 8cd1:V (3.0) BS02 rna ? GO:0003723 ... Q9HVC4 38443577
    34 8cd1:W (3.0) BS01 rna ? GO:0003735 ... Q9HVL7 38443577
    35 8cd1:W (3.0) BS02 rna ? GO:0003735 ... Q9HVL7 38443577
    36 8cd1:X (3.0) BS01 rna ? GO:0003735 ... Q9HTN8 38443577
    37 8cd1:Y (3.0) BS01 rna ? GO:0003735 ... Q9HWE3 38443577
    38 8cd1:Z (3.0) BS01 rna ? GO:0003735 ... Q9HWF3 38443577
    39 8cd1:Z (3.0) BS02 rna ? GO:0003735 ... Q9HWF3 38443577
    40 8cd1:b (3.0) BS01 rna ? GO:0003735 ... O82850 38443577
    41 8cd1:c (3.0) BS01 rna ? GO:0003676 ... Q9HWE1 38443577
    42 8cd1:d (3.0) BS01 rna ? GO:0003723 ... O52759 38443577
    43 8cd1:e (3.0) BS01 rna ? GO:0003723 ... Q9HWF2 38443577
    44 8cd1:f (3.0) BS01 rna ? GO:0003735 ... Q9HUM9 38443577
    45 8cd1:g (3.0) BS01 rna ? GO:0000028 ... Q9HWD1 38443577
    46 8cd1:h (3.0) BS01 rna ? GO:0003735 ... Q9HWE9 38443577
    47 8cd1:i (3.0) BS01 rna ? GO:0003723 ... Q9HVY3 38443577
    48 8cd1:j (3.0) BS01 rna ? GO:0000049 ... Q9HWD4 38443577
    49 8cd1:k (3.0) BS01 rna ? GO:0003735 ... Q9HWF8 38443577
    50 8cd1:l (3.0) BS01 rna ? GO:0000049 ... Q9HWD0 38443577
    51 8cd1:m (3.0) BS01 rna ? GO:0000049 ... Q9HWF7 38443577
    52 8cd1:m (3.0) BS02 rna ? GO:0000049 ... Q9HWF7 38443577
    53 8cd1:n (3.0) BS01 rna ? GO:0003735 ... Q9HWE8 38443577
    54 8cd1:o (3.0) BS01 rna ? GO:0003735 ... Q9HV58 38443577
    55 8cd1:o (3.0) BS02 rna ? GO:0003735 ... Q9HV58 38443577
    56 8cd1:p (3.0) BS01 rna ? GO:0003735 ... Q9HXP9 38443577
    57 8cd1:q (3.0) BS01 rna ? GO:0003735 ... Q9HWE4 38443577
    58 8cd1:r (3.0) BS01 rna ? GO:0003735 ... Q9HUN0 38443577
    59 8cd1:s (3.0) BS01 rna ? GO:0000028 ... Q9HWD9 38443577
    60 8cd1:t (3.0) BS01 rna ? GO:0003723 ... Q9HVM1 38443577
    61 8cd1:u (3.0) BS01 rna ? GO:0003735 ... Q9I5V8 38443577
    62 8cd1:v (3.0) BS01 rna ? N/A Q8SDE8 38443577
    63 8cd1:v (3.0) BS02 rna ? N/A Q8SDE8 38443577
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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