Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bhj:A (2.81) BS01 rna ? GO:0000027 ... P60422 37553384
    2 8bhj:B (2.81) BS01 rna ? GO:0000027 ... P60438 37553384
    3 8bhj:C (2.81) BS01 rna ? GO:0001070 ... P60723 37553384
    4 8bhj:D (2.81) BS01 rna ? GO:0000027 ... P62399 37553384
    5 8bhj:D (2.81) BS02 rna ? GO:0000027 ... P62399 37553384
    6 8bhj:D (2.81) BS03 rna ? GO:0000027 ... P62399 37553384
    7 8bhj:E (2.81) BS01 rna ? GO:0000027 ... P0AG55 37553384
    8 8bhj:F (2.81) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    9 8bhj:G (2.81) BS01 rna ? GO:0002181 ... P0AA10 37553384
    10 8bhj:H (2.81) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    11 8bhj:H (2.81) BS02 rna ? GO:0002181 ... P0ADY3 37553384
    12 8bhj:I (2.81) BS01 rna ? GO:0002181 ... P02413 37553384
    13 8bhj:J (2.81) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    14 8bhj:J (2.81) BS02 rna ? GO:0000027 ... P0ADY7 37553384
    15 8bhj:K (2.81) BS01 rna ? GO:0000027 ... P0AG44 37553384
    16 8bhj:L (2.81) BS01 rna ? GO:0002181 ... P0C018 37553384
    17 8bhj:L (2.81) BS02 rna ? GO:0002181 ... P0C018 37553384
    18 8bhj:M (2.81) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    19 8bhj:M (2.81) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    20 8bhj:N (2.81) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    21 8bhj:O (2.81) BS01 rna ? GO:0002181 ... P0AG48 37553384
    22 8bhj:P (2.81) BS01 rna ? GO:0002181 ... P61175 37553384
    23 8bhj:Q (2.81) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    24 8bhj:R (2.81) BS01 rna ? GO:0000027 ... P60624 37553384
    25 8bhj:S (2.81) BS01 rna ? GO:0000027 ... P68919 37553384
    26 8bhj:T (2.81) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    27 8bhj:U (2.81) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    28 8bhj:V (2.81) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    29 8bhj:W (2.81) BS01 rna ? GO:0000027 ... P0AG51 37553384
    30 8bhj:a (2.81) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    31 8bhj:b (2.81) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    32 8bhj:c (2.81) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    33 8bhj:d (2.81) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    34 8bhj:e (2.81) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    35 8bhj:f (2.81) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    36 8bhj:g (2.81) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    37 8bhj:h (2.81) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    38 8bhj:i (2.81) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    39 8bhj:j (2.81) BS01 rna ? GO:0002181 ... P02358 37553384
    40 8bhj:k (2.81) BS01 rna ? GO:0000028 ... P02359 37553384
    41 8bhj:l (2.81) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    42 8bhj:m (2.81) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    43 8bhj:m (2.81) BS02 rna ? GO:0000049 ... P0A7X3 37553384
    44 8bhj:n (2.81) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    45 8bhj:o (2.81) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    46 8bhj:p (2.81) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    47 8bhj:q (2.81) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    48 8bhj:r (2.81) BS01 rna ? GO:0000028 ... P0AG59 37553384
    49 8bhj:s (2.81) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    50 8bhj:t (2.81) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    51 8bhj:u (2.81) BS01 rna ? GO:0000028 ... P0AG63 37553384
    52 8bhj:v (2.81) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    53 8bhj:w (2.81) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    54 8bhj:x (2.81) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    55 8bhj:y (2.81) BS01 rna ? GO:0000028 ... P68679 37553384
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218