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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8b0x:0 (1.55) BS01 rna ? GO:0000027 ... P0A7N9 36841832
    2 8b0x:1 (1.55) BS01 rna ? GO:0002181 ... P0A7P5 36841832
    3 8b0x:2 (1.55) BS01 rna ? GO:0002181 ... P0A7Q1 36841832
    4 8b0x:3 (1.55) BS01 rna ? GO:0002181 ... P0A7Q6 36841832
    5 8b0x:3 (1.55) BS02 ZN ? GO:0002181 ... P0A7Q6 36841832
    6 8b0x:B (1.55) BS01 rna ? GO:0000028 ... P0A7V0 36841832
    7 8b0x:C (1.55) BS01 rna ? GO:0000028 ... P0A7V3 36841832
    8 8b0x:D (1.55) BS01 rna ? GO:0000028 ... P0A7V8 36841832
    9 8b0x:E (1.55) BS01 rna ? GO:0000028 ... P0A7W1 36841832
    10 8b0x:F (1.55) BS01 rna ? GO:0002181 ... P02358 36841832
    11 8b0x:G (1.55) BS01 rna ? GO:0000028 ... P02359 36841832
    12 8b0x:H (1.55) BS01 rna ? GO:0000028 ... P0A7W7 36841832
    13 8b0x:I (1.55) BS01 rna ? GO:0000049 ... P0A7X3 36841832
    14 8b0x:I (1.55) BS02 rna ? GO:0000049 ... P0A7X3 36841832
    15 8b0x:J (1.55) BS01 rna ? GO:0000049 ... P0A7R5 36841832
    16 8b0x:K (1.55) BS01 rna ? GO:0002181 ... P0A7R9 36841832
    17 8b0x:L (1.55) BS01 rna ? GO:0000049 ... P0A7S3 36841832
    18 8b0x:M (1.55) BS01 rna ? GO:0000049 ... P0A7S9 36841832
    19 8b0x:M (1.55) BS02 rna ? GO:0000049 ... P0A7S9 36841832
    20 8b0x:N (1.55) BS01 rna ? GO:0000028 ... P0AG59 36841832
    21 8b0x:O (1.55) BS01 rna ? GO:0000028 ... P0ADZ4 36841832
    22 8b0x:O (1.55) BS02 rna ? GO:0000028 ... P0ADZ4 36841832
    23 8b0x:P (1.55) BS01 rna ? GO:0000028 ... P0A7T3 36841832
    24 8b0x:Q (1.55) BS01 rna ? GO:0000028 ... P0AG63 36841832
    25 8b0x:R (1.55) BS01 rna ? GO:0002181 ... P0A7T7 36841832
    26 8b0x:S (1.55) BS01 rna ? GO:0000028 ... P0A7U3 36841832
    27 8b0x:T (1.55) BS01 rna ? GO:0000028 ... P0A7U7 36841832
    28 8b0x:U (1.55) BS01 rna ? GO:0000028 ... P68679 36841832
    29 8b0x:c (1.55) BS01 rna ? GO:0000027 ... P60422 36841832
    30 8b0x:d (1.55) BS01 rna ? GO:0000027 ... P60438 36841832
    31 8b0x:e (1.55) BS01 rna ? GO:0001070 ... P60723 36841832
    32 8b0x:f (1.55) BS01 rna ? GO:0000027 ... P62399 36841832
    33 8b0x:f (1.55) BS02 rna ? GO:0000027 ... P62399 36841832
    34 8b0x:f (1.55) BS03 rna ? GO:0000027 ... P62399 36841832
    35 8b0x:g (1.55) BS01 rna ? GO:0000027 ... P0AG55 36841832
    36 8b0x:h (1.55) BS01 rna ? GO:0002181 ... P0A7R1 36841832
    37 8b0x:i (1.55) BS01 rna ? GO:0002181 ... P0AA10 36841832
    38 8b0x:j (1.55) BS01 rna ? GO:0002181 ... P0ADY3 36841832
    39 8b0x:j (1.55) BS02 rna ? GO:0002181 ... P0ADY3 36841832
    40 8b0x:k (1.55) BS01 rna ? GO:0002181 ... P02413 36841832
    41 8b0x:l (1.55) BS01 rna ? GO:0000027 ... P0ADY7 36841832
    42 8b0x:l (1.55) BS02 rna ? GO:0000027 ... P0ADY7 36841832
    43 8b0x:m (1.55) BS01 rna ? GO:0000027 ... P0AG44 36841832
    44 8b0x:n (1.55) BS01 rna ? GO:0002181 ... P0C018 36841832
    45 8b0x:n (1.55) BS02 rna ? GO:0002181 ... P0C018 36841832
    46 8b0x:o (1.55) BS01 rna ? GO:0000027 ... P0A7K6 36841832
    47 8b0x:o (1.55) BS02 rna ? GO:0000027 ... P0A7K6 36841832
    48 8b0x:p (1.55) BS01 rna ? GO:0000027 ... P0A7L3 36841832
    49 8b0x:q (1.55) BS01 rna ? GO:0002181 ... P0AG48 36841832
    50 8b0x:r (1.55) BS01 rna ? GO:0002181 ... P61175 36841832
    51 8b0x:s (1.55) BS01 rna ? GO:0000027 ... P0ADZ0 36841832
    52 8b0x:t (1.55) BS01 rna ? GO:0000027 ... P60624 36841832
    53 8b0x:u (1.55) BS01 rna ? GO:0000027 ... P68919 36841832
    54 8b0x:v (1.55) BS01 rna ? GO:0000027 ... P0A7L8 36841832
    55 8b0x:v (1.55) BS02 rna ? GO:0000027 ... P0A7L8 36841832
    56 8b0x:w (1.55) BS01 rna ? GO:0000027 ... P0A7M2 36841832
    57 8b0x:x (1.55) BS01 rna ? GO:0000027 ... P0A7M6 36841832
    58 8b0x:y (1.55) BS01 rna ? GO:0000027 ... P0AG51 36841832
    59 8b0x:y (1.55) BS02 rna ? GO:0000027 ... P0AG51 36841832
    60 8b0x:z (1.55) BS01 rna ? GO:0000027 ... P0A7N4 36841832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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