Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zd6:1 (3.16) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 36104567
    2 7zd6:1 (3.16) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 36104567
    3 7zd6:1 (3.16) BS03 NAI 7.1.1.2 GO:0005739 ... W5PUX0 36104567
    4 7zd6:2 (3.16) BS01 FES 7.1.1.2 GO:0016491 ... W5NRY1 36104567
    5 7zd6:3 (3.16) BS01 SF4 N/A GO:0008137 ... N/A 36104567
    6 7zd6:3 (3.16) BS02 SF4 N/A GO:0008137 ... N/A 36104567
    7 7zd6:3 (3.16) BS03 FES N/A GO:0008137 ... N/A 36104567
    8 7zd6:4 (3.16) BS01 SF4 ? GO:0005739 ... A0A6P3DZ89 36104567
    9 7zd6:6 (3.16) BS01 SF4 ? GO:0008137 ... A0A6P7E5N1 36104567
    10 7zd6:9 (3.16) BS01 SF4 ? GO:0016020 ... A0A6P3TFB2 36104567
    11 7zd6:9 (3.16) BS02 SF4 ? GO:0016020 ... A0A6P3TFB2 36104567
    12 7zd6:H (3.16) BS01 DCQ 7.1.1.2 GO:0003954 ... O78747 36104567
    13 7zd6:b (3.16) BS01 ZN ? GO:0006120 ... A0A6P7EX23 36104567
    14 7zd6:d (3.16) BS01 NDP ? GO:0003954 ... A0A6P3E3I5 36104567
    15 7zd6:g (3.16) BS01 ZMP ? GO:0045271 ... W5QC06 36104567
    16 7zd6:k (3.16) BS01 AMP ? GO:0005737 ... A0A8N7XJK5 36104567
    17 7zd6:t (3.16) BS01 ZMP ? GO:0005739 ... A0A6P3E749 36104567
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218