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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7z15:C (1.93) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    2 7z15:C (1.93) BS02 I9X 2.7.8.37 GO:0005515 ... P16687 36813778
    3 7z15:D (1.93) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    4 7z15:D (1.93) BS02 I9X 4.7.1.1 GO:0005515 ... P16688 36813778
    5 7z15:G (1.93) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    6 7z15:G (1.93) BS02 I9X 2.7.8.37 GO:0005515 ... P16687 36813778
    7 7z15:H (1.93) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    8 7z15:H (1.93) BS02 I9X 4.7.1.1 GO:0005515 ... P16688 36813778
    9 7z15:I (1.93) BS01 ADP ? GO:0000166 ... P16678 36813778
    10 7z15:I (1.93) BS02 MG ? GO:0000166 ... P16678 36813778
    11 7z15:I (1.93) BS03 ADP ? GO:0000166 ... P16678 36813778
    12 7z15:J (1.93) BS01 ADP ? GO:0000166 ... P16678 36813778
    13 7z15:J (1.93) BS02 ADP ? GO:0000166 ... P16678 36813778
    14 7z15:J (1.93) BS03 MG ? GO:0000166 ... P16678 36813778
    15 7z15:K (1.93) BS01 ATP 2.7.8.37 GO:0005524 ... P16679 36813778
    16 7z15:L (1.93) BS01 ATP 2.7.8.37 GO:0005524 ... P16679 36813778
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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