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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7xn7:A (3.1) BS01 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    2 7xn7:A (3.1) BS02 rna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    3 7xn7:A (3.1) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    4 7xn7:A (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    5 7xn7:A (3.1) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    6 7xn7:A (3.1) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    7 7xn7:B (3.1) BS01 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    8 7xn7:B (3.1) BS02 rna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    9 7xn7:B (3.1) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    10 7xn7:B (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    11 7xn7:C (3.1) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    12 7xn7:E (3.1) BS01 dna ? GO:0001054 ... F2QX94 35981082
    13 7xn7:I (3.1) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    14 7xn7:I (3.1) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    15 7xn7:J (3.1) BS01 ZN ? GO:0000428 ... C4R009 35981082
    16 7xn7:L (3.1) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    17 7xn7:M (3.1) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    18 7xn7:V (3.1) BS01 ZN ? GO:0000775 ... C4R0E6 35981082
    19 7xn7:W (3.1) BS01 dna ? GO:0003711 ... C4R370 35981082
    20 7xn7:m (3.1) BS01 rna ? GO:0003676 ... C4R7H2 35981082
    21 7xn7:u (3.1) BS01 dna ? GO:0005634 ... C4R3K1 35981082
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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