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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7wtv:B (3.5) BS01 rna ? GO:0002181 ... P61247 36321656
    2 7wtv:C (3.5) BS01 rna ? GO:0002181 ... P15880 36321656
    3 7wtv:E (3.5) BS01 rna ? GO:0002181 ... P62701 36321656
    4 7wtv:F (3.5) BS01 rna ? GO:0000028 ... P46782 36321656
    5 7wtv:G (3.5) BS01 rna ? GO:0000082 ... P62753 36321656
    6 7wtv:H (3.5) BS01 rna ? GO:0001843 ... P62081 36321656
    7 7wtv:I (3.5) BS01 rna ? GO:0000462 ... P62241 36321656
    8 7wtv:J (3.5) BS01 rna ? GO:0002181 ... P46781 36321656
    9 7wtv:J (3.5) BS02 peptide ? GO:0002181 ... P46781 36321656
    10 7wtv:K (3.5) BS01 rna ? GO:0003723 ... Q5JTH9 36321656
    11 7wtv:L (3.5) BS01 rna ? GO:0002181 ... P62280 36321656
    12 7wtv:M (3.5) BS01 rna ? GO:0002181 ... P25398 36321656
    13 7wtv:N (3.5) BS01 rna ? GO:0002181 ... P62277 36321656
    14 7wtv:O (3.5) BS01 rna ? GO:0000028 ... P62263 36321656
    15 7wtv:P (3.5) BS01 rna ? GO:0000028 ... P62841 36321656
    16 7wtv:Q (3.5) BS01 rna ? GO:0000462 ... P62249 36321656
    17 7wtv:R (3.5) BS01 rna ? GO:0002181 ... P08708 36321656
    18 7wtv:S (3.5) BS01 rna ? GO:0002181 ... P62269 36321656
    19 7wtv:T (3.5) BS01 rna ? GO:0000028 ... P39019 36321656
    20 7wtv:W (3.5) BS01 rna ? GO:0002181 ... P62244 36321656
    21 7wtv:X (3.5) BS01 rna ? GO:0002181 ... P62266 36321656
    22 7wtv:Y (3.5) BS01 rna ? GO:0002181 ... P62847 36321656
    23 7wtv:Z (3.5) BS01 rna ? GO:0002181 ... P62851 36321656
    24 7wtv:b (3.5) BS01 rna ? GO:0000028 ... P42677 36321656
    25 7wtv:c (3.5) BS01 rna ? GO:0000028 ... P62857 36321656
    26 7wtv:f (3.5) BS01 rna ? GO:0002181 ... P62979 36321656
    27 7wtv:q (3.5) BS01 rna 2.1.1.- GO:0003723 ... O43709 36321656
    28 7wtv:q (3.5) BS02 SAH 2.1.1.- GO:0003723 ... O43709 36321656
    29 7wtv:u (3.5) BS01 rna ? GO:0000462 ... Q2NL82 36321656
    30 7wtv:w (3.5) BS01 rna ? GO:0000462 ... Q13895 36321656
    31 7wtv:x (3.5) BS01 rna ? GO:0003676 ... Q9NRX1 36321656
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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