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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7va4:A (14.0) BS01 dna ? GO:0000786 ... P68431 36104563
    2 7va4:A (14.0) BS02 dna ? GO:0000786 ... P68431 36104563
    3 7va4:C (14.0) BS01 dna ? GO:0000786 ... P04908 36104563
    4 7va4:C (14.0) BS02 dna ? GO:0000786 ... P04908 36104563
    5 7va4:D (14.0) BS01 dna ? GO:0000786 ... O60814 36104563
    6 7va4:D (14.0) BS02 dna ? GO:0000786 ... O60814 36104563
    7 7va4:E (14.0) BS01 dna ? GO:0000786 ... P68431 36104563
    8 7va4:F (14.0) BS01 dna ? GO:0000781 ... P62805 36104563
    9 7va4:F (14.0) BS02 dna ? GO:0000781 ... P62805 36104563
    10 7va4:G (14.0) BS01 dna ? GO:0000786 ... P04908 36104563
    11 7va4:G (14.0) BS02 dna ? GO:0000786 ... P04908 36104563
    12 7va4:H (14.0) BS01 dna ? GO:0000786 ... O60814 36104563
    13 7va4:H (14.0) BS02 dna ? GO:0000786 ... O60814 36104563
    14 7va4:K (14.0) BS01 dna ? GO:0000786 ... P68431 36104563
    15 7va4:K (14.0) BS02 dna ? GO:0000786 ... P68431 36104563
    16 7va4:L (14.0) BS01 dna ? GO:0000781 ... P62805 36104563
    17 7va4:M (14.0) BS01 dna ? GO:0000786 ... P04908 36104563
    18 7va4:M (14.0) BS02 dna ? GO:0000786 ... P04908 36104563
    19 7va4:N (14.0) BS01 dna ? GO:0000786 ... O60814 36104563
    20 7va4:N (14.0) BS02 dna ? GO:0000786 ... O60814 36104563
    21 7va4:O (14.0) BS01 dna ? GO:0000786 ... P68431 36104563
    22 7va4:O (14.0) BS02 dna ? GO:0000786 ... P68431 36104563
    23 7va4:P (14.0) BS01 dna ? GO:0000781 ... P62805 36104563
    24 7va4:P (14.0) BS02 dna ? GO:0000781 ... P62805 36104563
    25 7va4:Q (14.0) BS01 dna ? GO:0000786 ... P04908 36104563
    26 7va4:R (14.0) BS01 dna ? GO:0000786 ... O60814 36104563
    27 7va4:S (14.0) BS01 dna ? GO:0000786 ... P68431 36104563
    28 7va4:S (14.0) BS02 dna ? GO:0000786 ... P68431 36104563
    29 7va4:T (14.0) BS01 dna ? GO:0000781 ... P62805 36104563
    30 7va4:U (14.0) BS01 dna ? GO:0000786 ... P04908 36104563
    31 7va4:U (14.0) BS02 dna ? GO:0000786 ... P04908 36104563
    32 7va4:V (14.0) BS01 dna ? GO:0000786 ... O60814 36104563
    33 7va4:W (14.0) BS01 dna ? GO:0000786 ... P68431 36104563
    34 7va4:W (14.0) BS02 dna ? GO:0000786 ... P68431 36104563
    35 7va4:X (14.0) BS01 dna ? GO:0000781 ... P62805 36104563
    36 7va4:Y (14.0) BS01 dna ? GO:0000786 ... P04908 36104563
    37 7va4:Y (14.0) BS02 dna ? GO:0000786 ... P04908 36104563
    38 7va4:Z (14.0) BS01 dna ? GO:0000786 ... O60814 36104563
    39 7va4:Z (14.0) BS02 dna ? GO:0000786 ... O60814 36104563
    40 7va4:a (14.0) BS01 dna ? GO:0000786 ... P68431 36104563
    41 7va4:a (14.0) BS02 dna ? GO:0000786 ... P68431 36104563
    42 7va4:b (14.0) BS01 dna ? GO:0000781 ... P62805 36104563
    43 7va4:c (14.0) BS01 dna ? GO:0000786 ... P04908 36104563
    44 7va4:c (14.0) BS02 dna ? GO:0000786 ... P04908 36104563
    45 7va4:d (14.0) BS01 dna ? GO:0000786 ... O60814 36104563
    46 7va4:e (14.0) BS01 dna ? GO:0000786 ... P68431 36104563
    47 7va4:e (14.0) BS02 dna ? GO:0000786 ... P68431 36104563
    48 7va4:g (14.0) BS01 dna ? GO:0000786 ... P04908 36104563
    49 7va4:g (14.0) BS02 dna ? GO:0000786 ... P04908 36104563
    50 7va4:h (14.0) BS01 dna ? GO:0000786 ... O60814 36104563
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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