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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7syp:B (4.0) BS01 rna ? GO:0000028 ... G1TLT8 35822879
    2 7syp:C (4.0) BS01 rna ? GO:0003735 ... G1SS70 35822879
    3 7syp:C (4.0) BS02 rna ? GO:0003735 ... G1SS70 35822879
    4 7syp:D (4.0) BS01 rna ? GO:0003723 ... G1SV32 35822879
    5 7syp:E (4.0) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 35822879
    6 7syp:E (4.0) BS02 rna 4.2.99.18 GO:0003677 ... G1TNM3 35822879
    7 7syp:F (4.0) BS01 rna ? GO:0003723 ... G1TA47 35822879
    8 7syp:G (4.0) BS01 rna ? GO:0000028 ... G1TFM5 35822879
    9 7syp:G (4.0) BS02 rna ? GO:0000028 ... G1TFM5 35822879
    10 7syp:H (4.0) BS01 rna ? GO:0003735 ... A0A5K1UJS7 35822879
    11 7syp:I (4.0) BS01 rna ? GO:0003735 ... G1SVB0 35822879
    12 7syp:J (4.0) BS01 rna ? GO:0000462 ... G1TJW1 35822879
    13 7syp:K (4.0) BS01 rna ? GO:0003723 ... B7NZS8 35822879
    14 7syp:L (4.0) BS01 rna ? GO:0003723 ... G1TPV3 35822879
    15 7syp:M (4.0) BS01 rna ? GO:0003735 ... G1TRM4 35822879
    16 7syp:N (4.0) BS01 rna ? GO:0003735 ... G1SFR8 35822879
    17 7syp:O (4.0) BS01 rna ? GO:0003735 ... G1SP51 35822879
    18 7syp:P (4.0) BS01 rna ? GO:0000028 ... G1T1F0 35822879
    19 7syp:P (4.0) BS02 rna ? GO:0000028 ... G1T1F0 35822879
    20 7syp:Q (4.0) BS01 rna ? GO:0000028 ... G1U0Q2 35822879
    21 7syp:R (4.0) BS01 rna ? GO:0000462 ... G1SGX4 35822879
    22 7syp:S (4.0) BS01 rna ? GO:0003735 ... G1TU13 35822879
    23 7syp:T (4.0) BS01 rna ? GO:0003676 ... G1TPG3 35822879
    24 7syp:U (4.0) BS01 rna ? GO:0000028 ... G1TN62 35822879
    25 7syp:V (4.0) BS01 rna ? GO:0003723 ... G1SIZ2 35822879
    26 7syp:X (4.0) BS01 rna ? GO:0003735 ... G1TG89 35822879
    27 7syp:Y (4.0) BS01 rna ? GO:0003735 ... G1SZ47 35822879
    28 7syp:Z (4.0) BS01 rna ? GO:0003735 ... G1T3D8 35822879
    29 7syp:a (4.0) BS01 rna ? GO:0003735 ... G1TDB3 35822879
    30 7syp:a (4.0) BS02 rna ? GO:0003735 ... G1TDB3 35822879
    31 7syp:b (4.0) BS01 rna ? GO:0003735 ... G1TFE8 35822879
    32 7syp:b (4.0) BS02 rna ? GO:0003735 ... G1TFE8 35822879
    33 7syp:b (4.0) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    34 7syp:c (4.0) BS01 rna ? GO:0000028 ... G1TZ76 35822879
    35 7syp:c (4.0) BS02 rna ? GO:0000028 ... G1TZ76 35822879
    36 7syp:d (4.0) BS01 rna ? GO:0000028 ... G1TIB4 35822879
    37 7syp:d (4.0) BS02 rna ? GO:0000028 ... G1TIB4 35822879
    38 7syp:e (4.0) BS01 rna ? GO:0003735 ... G1U7M4 35822879
    39 7syp:f (4.0) BS01 rna ? GO:0003735 ... G1T8A2 35822879
    40 7syp:g (4.0) BS01 rna ? GO:0003735 ... G1SK22 35822879
    41 7syp:g (4.0) BS02 ZN ? GO:0003735 ... G1SK22 35822879
    42 7syp:h (4.0) BS01 rna ? GO:0001891 ... G1SJB4 35822879
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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