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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7r6k:7 (3.17) BS01 rna ? GO:0000055 ... P43586 36482249
    2 7r6k:8 (3.17) BS01 rna ? GO:0003729 ... P39744 36482249
    3 7r6k:G (3.17) BS01 rna ? GO:0000470 ... P17076 36482249
    4 7r6k:N (3.17) BS01 rna ? GO:0002181 ... P05748 36482249
    5 7r6k:i (3.17) BS01 rna ? GO:0002181 ... P05745 36482249
    6 7r6k:l (3.17) BS01 rna ? GO:0000463 ... Q08962 36482249
    7 7r6k:l (3.17) BS02 peptide ? GO:0000463 ... Q08962 36482249
    8 7r6k:q (3.17) BS01 rna 2.1.1.310 GO:0000463 ... P40991 36482249
    9 7r6k:w (3.17) BS01 rna 2.1.1.167 GO:0000451 ... P25582 36482249
    10 7r6k:w (3.17) BS02 peptide 2.1.1.167 GO:0000451 ... P25582 36482249
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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