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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pub:CC (3.7) BS01 rna N/A N/A N/A 35042777
    2 7pub:CE (3.7) BS01 rna ? GO:0003735 ... Q38AX6 35042777
    3 7pub:CF (3.7) BS01 rna ? GO:0005739 ... Q38BW5 35042777
    4 7pub:CH (3.7) BS01 rna ? GO:0000314 ... Q388R7 35042777
    5 7pub:CI (3.7) BS01 rna ? GO:0003735 ... Q57W62 35042777
    6 7pub:CJ (3.7) BS01 rna ? GO:0005737 ... Q57Z45 35042777
    7 7pub:CK (3.7) BS01 rna ? GO:0003735 ... Q389T7 35042777
    8 7pub:CL (3.7) BS01 rna N/A N/A N/A 35042777
    9 7pub:CN (3.7) BS01 rna ? GO:0005739 ... Q580I0 35042777
    10 7pub:CO (3.7) BS01 rna ? GO:0005739 ... Q4GZ99 35042777
    11 7pub:CP (3.7) BS01 rna ? GO:0005737 ... Q384N9 35042777
    12 7pub:CQ (3.7) BS01 rna ? GO:0000314 ... Q38DP8 35042777
    13 7pub:CR (3.7) BS01 rna ? GO:0003723 ... Q38AS2 35042777
    14 7pub:CS (3.7) BS01 rna N/A N/A N/A 35042777
    15 7pub:CU (3.7) BS01 rna ? GO:0005739 ... Q580M9 35042777
    16 7pub:Ca (3.7) BS01 rna ? GO:0005739 ... Q38DR3 35042777
    17 7pub:Cb (3.7) BS01 rna N/A N/A N/A 35042777
    18 7pub:Cd (3.7) BS01 rna ? GO:0005739 ... Q38DK6 35042777
    19 7pub:Cg (3.7) BS01 ATP N/A N/A N/A 35042777
    20 7pub:Ci (3.7) BS01 rna ? GO:0005739 ... Q57WW0 35042777
    21 7pub:Cj (3.7) BS01 rna ? GO:0005739 ... Q57UK0 35042777
    22 7pub:Cm (3.7) BS01 rna ? GO:0005737 ... Q38C96 35042777
    23 7pub:Cn (3.7) BS01 rna ? GO:0005739 ... Q57VQ9 35042777
    24 7pub:Cn (3.7) BS02 peptide ? GO:0005739 ... Q57VQ9 35042777
    25 7pub:Cp (3.7) BS01 rna ? GO:0005739 ... Q389L3 35042777
    26 7pub:Cr (3.7) BS01 ZN ? GO:0004784 ... Q585I1 35042777
    27 7pub:Cv (3.7) BS01 rna 3.1.2.4 GO:0003860 ... Q383R4 35042777
    28 7pub:DA (3.7) BS01 rna ? GO:0005739 ... Q57UJ2 35042777
    29 7pub:DA (3.7) BS02 ZN ? GO:0005739 ... Q57UJ2 35042777
    30 7pub:DD (3.7) BS01 rna ? GO:0000963 ... Q385L8 35042777
    31 7pub:DF (3.7) BS01 rna ? GO:0005737 ... Q38ET1 35042777
    32 7pub:DH (3.7) BS01 rna ? GO:0003729 ... Q580V1 35042777
    33 7pub:DJ (3.7) BS01 rna ? GO:0005737 ... Q584U8 35042777
    34 7pub:DJ (3.7) BS02 UTP ? GO:0005737 ... Q584U8 35042777
    35 7pub:DL (3.7) BS01 rna ? GO:0005739 ... Q38BS2 35042777
    36 7pub:DP (3.7) BS01 rna ? GO:0005737 ... Q38F25 35042777
    37 7pub:DQ (3.7) BS01 rna ? GO:0005737 ... Q382E8 35042777
    38 7pub:DR (3.7) BS01 rna ? GO:0005739 ... Q57UA2 35042777
    39 7pub:DS (3.7) BS01 rna ? GO:0005739 ... Q388L7 35042777
    40 7pub:DS (3.7) BS02 ZN ? GO:0005739 ... Q388L7 35042777
    41 7pub:DT (3.7) BS01 rna ? GO:0004792 ... Q586G5 35042777
    42 7pub:DU (3.7) BS01 rna ? GO:0005739 ... Q582T9 35042777
    43 7pub:DV (3.7) BS01 rna ? GO:0005739 ... Q57UZ6 35042777
    44 7pub:DW (3.7) BS01 rna ? GO:0005739 ... Q383N9 35042777
    45 7pub:DX (3.7) BS01 rna ? GO:0005739 ... Q383G5 35042777
    46 7pub:DY (3.7) BS01 rna ? GO:0005739 ... Q57YD4 35042777
    47 7pub:DZ (3.7) BS01 rna ? GO:0005739 ... Q587C4 35042777
    48 7pub:Da (3.7) BS01 rna N/A N/A N/A 35042777
    49 7pub:F3 (3.7) BS01 rna ? GO:0005739 ... Q38E61 35042777
    50 7pub:F6 (3.7) BS01 rna N/A N/A N/A 35042777
    51 7pub:F6 (3.7) BS02 peptide N/A N/A N/A 35042777
    52 7pub:F7 (3.7) BS01 rna ? GO:0003729 ... Q57UW6 35042777
    53 7pub:F9 (3.7) BS01 rna ? GO:0005515 ... Q57YC0 35042777
    54 7pub:FO (3.7) BS01 rna ? GO:0005737 ... Q389F9 35042777
    55 7pub:FO (3.7) BS02 peptide ? GO:0005737 ... Q389F9 35042777
    56 7pub:Ff (3.7) BS01 rna 4.1.99.3 GO:0000719 ... Q382U6 35042777
    57 7pub:Ff (3.7) BS02 FAD 4.1.99.3 GO:0000719 ... Q382U6 35042777
    58 7pub:Fg (3.7) BS01 rna 2.3.1.39 GO:0004314 ... Q38DK4 35042777
    59 7pub:Fg (3.7) BS02 GDP 2.3.1.39 GO:0004314 ... Q38DK4 35042777
    60 7pub:Fh (3.7) BS01 rna ? GO:0005737 ... Q38A63 35042777
    61 7pub:Fi (3.7) BS01 rna ? GO:0005739 ... Q57ZP1 35042777
    62 7pub:Fi (3.7) BS02 peptide ? GO:0005739 ... Q57ZP1 35042777
    63 7pub:Fi (3.7) BS03 peptide ? GO:0005739 ... Q57ZP1 35042777
    64 7pub:IA (3.7) BS01 rna ? GO:0000166 ... Q57WE3 35042777
    65 7pub:IA (3.7) BS02 peptide ? GO:0000166 ... Q57WE3 35042777
    66 7pub:IA (3.7) BS03 GDP ? GO:0000166 ... Q57WE3 35042777
    67 7pub:IA (3.7) BS04 MG ? GO:0000166 ... Q57WE3 35042777
    68 7pub:IB (3.7) BS01 rna ? GO:0005739 ... Q387Q6 35042777
    69 7pub:U7 (3.7) BS01 rna N/A N/A N/A 35042777
    70 7pub:UE (3.7) BS01 rna N/A N/A N/A 35042777
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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